Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JHX98_RS00250 Genome accession   NZ_CP067010
Coordinates   33423..34178 (+) Length   251 a.a.
NCBI ID   WP_002986719.1    Uniprot ID   A2RBY9
Organism   Streptococcus pyogenes strain iGAS376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28423..39178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX98_RS00240 (JHX98_00240) - 30826..32022 (+) 1197 WP_011017226.1 CHAP domain-containing protein -
  JHX98_RS00245 (JHX98_00245) - 32275..33237 (+) 963 WP_002986722.1 ribose-phosphate diphosphokinase -
  JHX98_RS00250 (JHX98_00250) recO 33423..34178 (+) 756 WP_002986719.1 DNA repair protein RecO Machinery gene
  JHX98_RS00255 (JHX98_00255) - 34310..35398 (-) 1089 WP_200221150.1 site-specific integrase -
  JHX98_RS00260 (JHX98_00260) - 35574..36125 (-) 552 WP_011054899.1 hypothetical protein -
  JHX98_RS00265 (JHX98_00265) - 36136..36519 (-) 384 WP_011054898.1 ImmA/IrrE family metallo-endopeptidase -
  JHX98_RS00270 (JHX98_00270) - 36533..36883 (-) 351 WP_011184049.1 helix-turn-helix transcriptional regulator -
  JHX98_RS00275 (JHX98_00275) - 37522..37713 (+) 192 WP_001283052.1 hypothetical protein -
  JHX98_RS00280 (JHX98_00280) - 37764..37964 (+) 201 WP_011184050.1 hypothetical protein -
  JHX98_RS00285 (JHX98_00285) - 38052..38309 (+) 258 WP_011054895.1 hypothetical protein -
  JHX98_RS00290 (JHX98_00290) - 38338..38508 (+) 171 WP_011054894.1 hypothetical protein -
  JHX98_RS00295 (JHX98_00295) - 38501..38708 (+) 208 Protein_25 hypothetical protein -
  JHX98_RS00300 (JHX98_00300) - 38705..39088 (+) 384 WP_011054892.1 hypothetical protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29516.97 Da        Isoelectric Point: 6.9077

>NTDB_id=456928 JHX98_RS00250 WP_002986719.1 33423..34178(+) (recO) [Streptococcus pyogenes strain iGAS376]
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQPLTIADFIFKLNDTGLSYVVDYSNVNTYRY
INNDIFRLAYASYVLALADAAIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFHECAICHRTDL
PLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKITFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFI
DNLVKWGDIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=456928 JHX98_RS00250 WP_002986719.1 33423..34178(+) (recO) [Streptococcus pyogenes strain iGAS376]
ATGCAACTAACAGAATCACTAGGCATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTAGTCAAAATATTTAC
TGAAGTAGCAGGTAAGCAGATGTTTTTCGTGAAACATATTAGTCGTTCCAAAATGTCCTCAATCATTCAACCACTAACGA
TTGCTGATTTTATTTTCAAGTTAAATGATACAGGCTTGTCTTATGTTGTTGACTATAGTAACGTTAACACTTATCGGTAT
ATTAATAATGATATTTTTCGATTAGCCTATGCTAGTTATGTCTTAGCATTAGCTGATGCTGCGATTGCAGATAATGAATC
AGATTCGCATTTGTTTACGTTTTTGAAAAAAACACTTGATTTGATGGAAGAGGGCCTAGATTATGAAATTTTGACAAATA
TTTTTGAAATTCAGATATTAGATCGTTTTGGTATTAGTCTAAACTTTCATGAGTGTGCCATTTGTCATCGTACTGATTTA
CCACTTGATTTTTCCCATCGTTTTTCAGCTGTACTTTGTTCTGAACATTATTACAAAGACAACCGACGTAATCATTTAGA
TCCAAATGTTATCTACTTGTTGAGTCGATTTCAAAAAATCACATTTGATGATTTGAGAACTATTTCATTGAATAAAGACA
TCAAAAAGAAGCTTCGTCAGTTCATTGATGAGTTGTATCACGACTATGTAGGAATCAAATTAAAAAGTAAAACATTCATT
GATAATTTAGTTAAGTGGGGAGATATTATGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

60.159

100

0.602