Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ41_RS23130 Genome accession   NZ_CP055219
Coordinates   4710119..4710748 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain STEFF_12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4705119..4715748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ41_RS23110 (HUZ41_22910) - 4705520..4707280 (-) 1761 WP_000156518.1 Lon protease family protein -
  HUZ41_RS23115 (HUZ41_22915) matP 4707466..4707918 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ41_RS23120 (HUZ41_22920) ompA 4707994..4709034 (-) 1041 WP_024238687.1 porin OmpA -
  HUZ41_RS23125 (HUZ41_22925) sulA 4709391..4709900 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  HUZ41_RS23130 (HUZ41_22930) sxy/tfoX 4710119..4710748 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ41_RS23135 (HUZ41_22935) yccS 4710711..4712873 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HUZ41_RS23140 (HUZ41_22940) - 4712883..4713329 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ41_RS23145 (HUZ41_22945) helD 4713452..4715506 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456888 HUZ41_RS23130 WP_000839153.1 4710119..4710748(+) (sxy/tfoX) [Shigella flexneri strain STEFF_12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456888 HUZ41_RS23130 WP_000839153.1 4710119..4710748(+) (sxy/tfoX) [Shigella flexneri strain STEFF_12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1