Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ48_RS16175 Genome accession   NZ_CP055213
Coordinates   3312139..3312735 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain STEFF_21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3307139..3317735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ48_RS16160 (HUZ48_16105) helD 3307350..3309404 (-) 2055 WP_237902134.1 DNA helicase IV -
  HUZ48_RS16165 (HUZ48_16110) - 3309529..3309975 (+) 447 WP_004201437.1 YccF domain-containing protein -
  HUZ48_RS16170 (HUZ48_16115) yccS 3309993..3312128 (+) 2136 WP_023289054.1 YccS family putative transporter -
  HUZ48_RS16175 (HUZ48_16120) sxy/tfoX 3312139..3312735 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  HUZ48_RS16180 (HUZ48_16125) - 3312753..3313058 (-) 306 WP_237902135.1 hypothetical protein -
  HUZ48_RS16185 (HUZ48_16130) sulA 3313084..3313593 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  HUZ48_RS16190 (HUZ48_16135) ompA 3313946..3315016 (+) 1071 WP_023289051.1 porin OmpA -
  HUZ48_RS16195 (HUZ48_16140) matP 3315163..3315615 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HUZ48_RS16200 (HUZ48_16145) - 3315801..3317558 (+) 1758 WP_237902136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=456836 HUZ48_RS16175 WP_023289053.1 3312139..3312735(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain STEFF_21]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=456836 HUZ48_RS16175 WP_023289053.1 3312139..3312735(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain STEFF_21]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTATTCCGCTTGTCGTTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGATGTGTTAGCACTACGGGAGGTGGGTGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTTTCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495