Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ38_RS23985 Genome accession   NZ_CP055210
Coordinates   4963834..4964430 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain STEFF_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4958834..4969430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ38_RS23965 (HUZ38_23900) - 4959026..4960783 (-) 1758 WP_020324406.1 Lon protease family protein -
  HUZ38_RS23970 (HUZ38_23905) matP 4960969..4961421 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HUZ38_RS23975 (HUZ38_23910) ompA 4961553..4962623 (-) 1071 WP_002898408.1 porin OmpA -
  HUZ38_RS23980 (HUZ38_23915) sulA 4962976..4963485 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  HUZ38_RS23985 (HUZ38_23920) sxy/tfoX 4963834..4964430 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HUZ38_RS23990 (HUZ38_23925) yccS 4964444..4966579 (-) 2136 WP_004147856.1 YccS family putative transporter -
  HUZ38_RS23995 (HUZ38_23930) - 4966597..4967043 (-) 447 WP_002898425.1 YccF domain-containing protein -
  HUZ38_RS24000 (HUZ38_23935) helD 4967168..4969222 (+) 2055 WP_020324408.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=456821 HUZ38_RS23985 WP_004179217.1 4963834..4964430(+) (sxy/tfoX) [Klebsiella pneumoniae strain STEFF_2]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=456821 HUZ38_RS23985 WP_004179217.1 4963834..4964430(+) (sxy/tfoX) [Klebsiella pneumoniae strain STEFF_2]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51