Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JCR30_RS07300 Genome accession   NZ_CP067008
Coordinates   1414842..1415450 (+) Length   202 a.a.
NCBI ID   WP_011888663.1    Uniprot ID   A2RD54
Organism   Streptococcus pyogenes strain iGAS426     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1409842..1420450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR30_RS07270 (JCR30_07270) - 1410093..1410575 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  JCR30_RS07275 (JCR30_07275) - 1410720..1412189 (-) 1470 WP_002983629.1 cell division site-positioning protein MapZ family protein -
  JCR30_RS07280 (JCR30_07280) - 1412203..1413357 (-) 1155 WP_011888664.1 class I SAM-dependent RNA methyltransferase -
  JCR30_RS07290 (JCR30_07290) gpsB 1413802..1414128 (-) 327 WP_002983626.1 cell division regulator GpsB -
  JCR30_RS07295 (JCR30_07295) - 1414247..1414761 (-) 515 Protein_1394 DUF1273 domain-containing protein -
  JCR30_RS07300 (JCR30_07300) recU 1414842..1415450 (+) 609 WP_011888663.1 Holliday junction resolvase RecU Machinery gene
  JCR30_RS07305 (JCR30_07305) pbp1a 1415437..1417602 (+) 2166 WP_011888662.1 penicillin-binding protein PBP1A -
  JCR30_RS07310 (JCR30_07310) pepC 1418069..1419406 (-) 1338 WP_011184829.1 aminopeptidase C -
  JCR30_RS07315 (JCR30_07315) nadE 1419591..1420415 (-) 825 WP_011888661.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23386.95 Da        Isoelectric Point: 9.8725

>NTDB_id=456807 JCR30_RS07300 WP_011888663.1 1414842..1415450(+) (recU) [Streptococcus pyogenes strain iGAS426]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMTCVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=456807 JCR30_RS07300 WP_011888663.1 1414842..1415450(+) (recU) [Streptococcus pyogenes strain iGAS426]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGACTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RD54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5