Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | HUZ39_RS15260 | Genome accession | NZ_CP055199 |
| Coordinates | 3071353..3071982 (-) | Length | 209 a.a. |
| NCBI ID | WP_106464856.1 | Uniprot ID | - |
| Organism | Shigella flexneri strain STEFF_3 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3062181..3099556 | 3071353..3071982 | within | 0 |
Gene organization within MGE regions
Location: 3062181..3099556
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ39_RS15210 (HUZ39_15100) | tusE | 3062452..3062781 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| HUZ39_RS15215 (HUZ39_15105) | yccX | 3062778..3063056 (-) | 279 | WP_000048249.1 | acylphosphatase | - |
| HUZ39_RS15220 (HUZ39_15110) | rlmI | 3063151..3064341 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| HUZ39_RS15225 (HUZ39_15115) | hspQ | 3064399..3064716 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| HUZ39_RS15230 (HUZ39_15120) | - | 3064761..3065174 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| HUZ39_RS15235 (HUZ39_15125) | - | 3065347..3066009 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| HUZ39_RS15240 (HUZ39_15130) | mgsA | 3066105..3066563 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| HUZ39_RS15245 (HUZ39_15135) | helD | 3066595..3068649 (-) | 2055 | WP_000420533.1 | DNA helicase IV | - |
| HUZ39_RS15250 (HUZ39_15140) | - | 3068772..3069218 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| HUZ39_RS15255 (HUZ39_15145) | yccS | 3069228..3071390 (+) | 2163 | WP_000875020.1 | YccS family putative transporter | - |
| HUZ39_RS15260 (HUZ39_15150) | sxy/tfoX | 3071353..3071982 (-) | 630 | WP_106464856.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| HUZ39_RS15265 (HUZ39_15155) | sulA | 3072201..3072710 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| HUZ39_RS15270 (HUZ39_15160) | ompA | 3073067..3074107 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| HUZ39_RS15275 (HUZ39_15165) | matP | 3074183..3074635 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| HUZ39_RS15280 (HUZ39_15170) | - | 3074821..3076581 (+) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| HUZ39_RS15285 (HUZ39_15175) | fabA | 3076650..3077168 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| HUZ39_RS15290 (HUZ39_15180) | rmf | 3077238..3077405 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| HUZ39_RS15295 (HUZ39_15185) | pqiC | 3077661..3078224 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| HUZ39_RS15300 (HUZ39_15190) | pqiB | 3078221..3079861 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| HUZ39_RS15305 (HUZ39_15195) | pqiA | 3079866..3081119 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| HUZ39_RS15310 (HUZ39_15200) | - | 3081249..3083156 (-) | 1908 | WP_000053124.1 | ABC transporter ATP-binding protein | - |
| HUZ39_RS15315 (HUZ39_15205) | rlmKL | 3083168..3085276 (-) | 2109 | WP_001086526.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| HUZ39_RS15320 (HUZ39_15210) | ycbX | 3085520..3086629 (+) | 1110 | WP_000224273.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| HUZ39_RS15325 (HUZ39_15215) | zapC | 3086626..3087168 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| HUZ39_RS15330 (HUZ39_15220) | pyrD | 3087342..3088352 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| HUZ39_RS15335 (HUZ39_15225) | - | 3088463..3089200 (-) | 738 | WP_001111470.1 | fimbrial chaperone | - |
| HUZ39_RS15340 (HUZ39_15230) | - | 3089166..3089681 (-) | 516 | WP_000919489.1 | fimbrial protein | - |
| HUZ39_RS15345 (HUZ39_15235) | - | 3089689..3090231 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| HUZ39_RS15350 (HUZ39_15240) | - | 3090243..3091313 (-) | 1071 | WP_001165658.1 | fimbrial protein | - |
| HUZ39_RS15355 (HUZ39_15245) | - | 3091304..3093304 (-) | 2001 | Protein_3026 | fimbrial biogenesis usher protein | - |
| HUZ39_RS15360 (HUZ39_15250) | - | 3093313..3094287 (-) | 975 | WP_012478345.1 | IS30-like element ISApl1 family transposase | - |
| HUZ39_RS15365 (HUZ39_15255) | - | 3094364..3094976 (-) | 613 | Protein_3028 | FimD/PapC N-terminal domain-containing protein | - |
| HUZ39_RS15370 (HUZ39_15260) | - | 3095001..3095702 (-) | 702 | WP_000845152.1 | molecular chaperone | - |
| HUZ39_RS15375 (HUZ39_15265) | - | 3095785..3096327 (-) | 543 | WP_106464855.1 | fimbrial protein | - |
| HUZ39_RS15380 (HUZ39_15270) | ssuE | 3096683..3097258 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| HUZ39_RS15385 (HUZ39_15275) | ssuA | 3097251..3098210 (+) | 960 | WP_001244342.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| HUZ39_RS15390 (HUZ39_15280) | ssuD | 3098207..3099352 (+) | 1146 | WP_239637907.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24193.10 Da Isoelectric Point: 9.0428
>NTDB_id=456790 HUZ39_RS15260 WP_106464856.1 3071353..3071982(-) (sxy/tfoX) [Shigella flexneri strain STEFF_3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLECAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=456790 HUZ39_RS15260 WP_106464856.1 3071353..3071982(-) (sxy/tfoX) [Shigella flexneri strain STEFF_3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAATGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |