Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JCR30_RS04980 Genome accession   NZ_CP067008
Coordinates   945704..946774 (+) Length   356 a.a.
NCBI ID   WP_011888858.1    Uniprot ID   A2RED8
Organism   Streptococcus pyogenes strain iGAS426     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940704..951774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR30_RS04960 (JCR30_04960) - 941710..942408 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  JCR30_RS04965 (JCR30_04965) - 942506..942838 (+) 333 WP_002989745.1 putative DNA-binding protein -
  JCR30_RS04970 (JCR30_04970) ffh 942853..944415 (+) 1563 WP_011888857.1 signal recognition particle protein -
  JCR30_RS04975 (JCR30_04975) - 944532..945230 (-) 699 WP_002993300.1 S24 family peptidase -
  JCR30_RS04980 (JCR30_04980) xerS 945704..946774 (+) 1071 WP_011888858.1 tyrosine recombinase XerS Machinery gene
  JCR30_RS04985 (JCR30_04985) - 947472..947954 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  JCR30_RS04990 (JCR30_04990) citC 948043..949095 (+) 1053 WP_011184530.1 [citrate (pro-3S)-lyase] ligase -
  JCR30_RS04995 (JCR30_04995) - 949205..950599 (-) 1395 WP_023077328.1 oxaloacetate decarboxylase subunit alpha -
  JCR30_RS05000 (JCR30_05000) citX 950614..951192 (-) 579 WP_011888860.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41473.50 Da        Isoelectric Point: 9.4794

>NTDB_id=456789 JCR30_RS04980 WP_011888858.1 945704..946774(+) (xerS) [Streptococcus pyogenes strain iGAS426]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKNDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=456789 JCR30_RS04980 WP_011888858.1 945704..946774(+) (xerS) [Streptococcus pyogenes strain iGAS426]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAATGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RED8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801