Detailed information NTG0045675

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: APECO78_RS18045
• Genome accession: NC_020163
• Coordinates: 3598668..3599660 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli APEC O78
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3593668..3604660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APECO78_RS18025 (APECO78_17275)	otnK	3594443..3595705 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
APECO78_RS18030 (APECO78_17280)	ygbL	3595702..3596340 (+)	639	WP_001278994.1	aldolase	-
APECO78_RS18035 (APECO78_17285)	ygbM	3596345..3597121 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
APECO78_RS18040 (APECO78_17290)	ygbN	3597210..3598574 (+)	1365	WP_000104456.1	GntP family transporter	-
APECO78_RS18045 (APECO78_17295)	rpoS	3598668..3599660 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
APECO78_RS18050 (APECO78_17300)	nlpD	3599723..3600817 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
APECO78_RS18055 (APECO78_17305)	pcm	3601002..3601628 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
APECO78_RS18060 (APECO78_17310)	surE	3601622..3602383 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
APECO78_RS18065 (APECO78_17315)	truD	3602364..3603413 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
APECO78_RS18070 (APECO78_17320)	ispF	3603410..3603889 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
APECO78_RS18075 (APECO78_17325)	ispD	3603889..3604599 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=45675 APECO78_RS18045 WP_000081550.1 3598668..3599660(-) (rpoS) [Escherichia coli APEC O78]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=45675 APECO78_RS18045 WP_000081550.1 3598668..3599660(-) (rpoS) [Escherichia coli APEC O78]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715