Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JHL13_RS08680 Genome accession   NZ_CP066844
Coordinates   1855659..1857083 (-) Length   474 a.a.
NCBI ID   WP_089560451.1    Uniprot ID   -
Organism   Escherichia coli strain Z30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850659..1862083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHL13_RS08645 (JHL13_08590) hisL 1851243..1851293 (-) 51 WP_001364200.1 his operon leader peptide -
  JHL13_RS08650 (JHL13_08595) yefM 1851576..1851827 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JHL13_RS08655 (JHL13_08600) yoeB 1851824..1852078 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JHL13_RS08660 (JHL13_08605) yeeZ 1852161..1852985 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JHL13_RS08665 (JHL13_08610) yeeY 1853031..1853960 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  JHL13_RS08670 (JHL13_08615) yoeI 1854175..1854237 (+) 63 WP_010723108.1 membrane protein YoeI -
  JHL13_RS08675 (JHL13_08620) plaP 1854227..1855585 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JHL13_RS08680 (JHL13_08625) sbcB 1855659..1857083 (-) 1425 WP_089560451.1 exodeoxyribonuclease I Machinery gene
  JHL13_RS08685 (JHL13_08630) - 1857265..1858443 (+) 1179 WP_044078731.1 tyrosine-type recombinase/integrase -
  JHL13_RS08690 (JHL13_08635) - 1858424..1858615 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  JHL13_RS08695 (JHL13_08640) - 1858646..1858813 (-) 168 WP_039052525.1 hypothetical protein -
  JHL13_RS08700 (JHL13_08645) - 1858914..1859198 (-) 285 WP_020231265.1 DUF4752 family protein -
  JHL13_RS23930 (JHL13_08650) - 1859198..1859830 (-) 633 WP_319003601.1 DUF551 domain-containing protein -
  JHL13_RS23850 - 1859846..1859980 (-) 135 Protein_1711 DUF551 domain-containing protein -
  JHL13_RS08710 (JHL13_08655) - 1859977..1860186 (-) 210 WP_000951706.1 hypothetical protein -
  JHL13_RS08715 (JHL13_08660) - 1860188..1860376 (-) 189 WP_000797276.1 hypothetical protein -
  JHL13_RS08720 (JHL13_08665) - 1860549..1861301 (-) 753 WP_226153446.1 ead/Ea22-like family protein -
  JHL13_RS08725 (JHL13_08670) - 1861303..1861602 (-) 300 WP_001555356.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54364.51 Da        Isoelectric Point: 5.1506

>NTDB_id=456691 JHL13_RS08680 WP_089560451.1 1855659..1857083(-) (sbcB) [Escherichia coli strain Z30]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAE
RLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=456691 JHL13_RS08680 WP_089560451.1 1855659..1857083(-) (sbcB) [Escherichia coli strain Z30]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAGCTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGTCCGGAAGACGCTGAG
CGTTTAGGGATTGATCGTCAACATTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGTTGT
GGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCGACG
CCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGATAAG
CGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.574

99.156

0.591