Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ49_RS07680 Genome accession   NZ_CP055170
Coordinates   1622923..1623552 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain STEFF_22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617923..1628552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ49_RS07660 (HUZ49_07615) - 1618313..1620073 (-) 1761 WP_063108323.1 Lon protease family protein -
  HUZ49_RS07665 (HUZ49_07620) matP 1620259..1620711 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HUZ49_RS07670 (HUZ49_07625) ompA 1620786..1621838 (-) 1053 WP_000750419.1 porin OmpA -
  HUZ49_RS07675 (HUZ49_07630) sulA 1622195..1622704 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ49_RS07680 (HUZ49_07635) sxy/tfoX 1622923..1623552 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ49_RS07685 (HUZ49_07640) yccS 1623515..1625677 (-) 2163 WP_000875019.1 YccS family putative transporter -
  HUZ49_RS07690 (HUZ49_07645) - 1625687..1626133 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ49_RS07695 (HUZ49_07650) helD 1626256..1628310 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456624 HUZ49_RS07680 WP_000839153.1 1622923..1623552(+) (sxy/tfoX) [Shigella flexneri strain STEFF_22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456624 HUZ49_RS07680 WP_000839153.1 1622923..1623552(+) (sxy/tfoX) [Shigella flexneri strain STEFF_22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1