Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ50_RS14290 Genome accession   NZ_CP055167
Coordinates   2931382..2932011 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain STEFF_24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2926382..2937011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ50_RS14275 (HUZ50_14180) helD 2926624..2928678 (-) 2055 WP_001297106.1 DNA helicase IV -
  HUZ50_RS14280 (HUZ50_14185) - 2928801..2929247 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ50_RS14285 (HUZ50_14190) yccS 2929257..2931419 (+) 2163 WP_000875015.1 YccS family putative transporter -
  HUZ50_RS14290 (HUZ50_14195) sxy/tfoX 2931382..2932011 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ50_RS14295 (HUZ50_14200) sulA 2932230..2932739 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ50_RS14300 (HUZ50_14205) ompA 2933096..2934148 (+) 1053 WP_000750419.1 porin OmpA -
  HUZ50_RS14305 (HUZ50_14210) matP 2934224..2934676 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ50_RS14310 (HUZ50_14215) - 2934862..2936622 (+) 1761 WP_063625537.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456611 HUZ50_RS14290 WP_000839153.1 2931382..2932011(-) (sxy/tfoX) [Shigella flexneri strain STEFF_24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456611 HUZ50_RS14290 WP_000839153.1 2931382..2932011(-) (sxy/tfoX) [Shigella flexneri strain STEFF_24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1