Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JH476_RS00545 Genome accession   NZ_CP066836
Coordinates   111073..112500 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain Ec-FL1-1X     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106073..117500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH476_RS00515 (JH476_00520) yeeZ 106128..106952 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JH476_RS00520 (JH476_00525) yeeY 106998..107927 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  JH476_RS00525 (JH476_00530) yoeI 108142..108204 (+) 63 WP_010723108.1 membrane protein YoeI -
  JH476_RS00530 (JH476_00535) plaP 108194..109552 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JH476_RS00535 (JH476_00540) tsuA 109731..110789 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  JH476_RS00540 (JH476_00545) tsuB 110803..111030 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JH476_RS00545 (JH476_00550) sbcB 111073..112500 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  JH476_RS00550 (JH476_00555) dacD 112709..113875 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JH476_RS00555 (JH476_00560) sbmC 113994..114467 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  JH476_RS00560 (JH476_00565) yeeA 114665..115723 (+) 1059 WP_001200905.1 FUSC family protein -
  JH476_RS00565 (JH476_00570) tmaR 115895..116224 (+) 330 WP_000450409.1 DUF496 family protein -
  JH476_RS00570 (JH476_00575) - 116325..116507 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JH476_RS00575 (JH476_00580) - 116570..116707 (+) 138 Protein_115 transposase domain-containing protein -
  JH476_RS00580 (JH476_00585) - 116996..117088 (-) 93 Protein_116 DUF957 domain-containing protein -
  JH476_RS00585 (JH476_00590) yeeW 117122..117316 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=456488 JH476_RS00545 WP_000980570.1 111073..112500(-) (sbcB) [Escherichia coli strain Ec-FL1-1X]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=456488 JH476_RS00545 WP_000980570.1 111073..112500(-) (sbcB) [Escherichia coli strain Ec-FL1-1X]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581