Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   APECO78_RS06080 Genome accession   NC_020163
Coordinates   1206155..1206760 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli APEC O78     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201155..1211760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO78_RS27475 - 1201709..1201807 (+) 99 Protein_1145 hypothetical protein -
  APECO78_RS06050 (APECO78_05850) rsmS 1201860..1202021 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  APECO78_RS06055 (APECO78_05855) priC 1202035..1202562 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  APECO78_RS06060 (APECO78_05860) ybaN 1202632..1203009 (+) 378 WP_001188905.1 DUF454 family protein -
  APECO78_RS06065 (APECO78_05865) apt 1203162..1203713 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  APECO78_RS06070 (APECO78_05870) dnaX 1203842..1205773 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  APECO78_RS06075 (APECO78_05875) ybaB 1205826..1206155 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  APECO78_RS06080 (APECO78_05880) recR 1206155..1206760 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  APECO78_RS06085 (APECO78_05885) htpG 1206870..1208744 (+) 1875 WP_000678213.1 molecular chaperone HtpG -
  APECO78_RS06090 (APECO78_05890) adk 1208925..1209569 (+) 645 WP_001220233.1 adenylate kinase -
  APECO78_RS06095 (APECO78_05895) hemH 1209805..1210767 (+) 963 WP_001250088.1 ferrochelatase -
  APECO78_RS06100 (APECO78_05900) aes 1210764..1211723 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=45643 APECO78_RS06080 WP_001195025.1 1206155..1206760(+) (recR) [Escherichia coli APEC O78]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=45643 APECO78_RS06080 WP_001195025.1 1206155..1206760(+) (recR) [Escherichia coli APEC O78]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment