Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUW51_RS08215 Genome accession   NZ_CP055156
Coordinates   1812584..1813960 (+) Length   458 a.a.
NCBI ID   WP_185273492.1    Uniprot ID   A0A7G7G6D0
Organism   Adhaeribacter swui strain KCTC 52873     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1807584..1818960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW51_RS08200 (HUW51_08195) - 1809346..1809918 (-) 573 WP_185273489.1 hypothetical protein -
  HUW51_RS08205 (HUW51_08200) - 1810367..1811611 (+) 1245 WP_185273490.1 MFS transporter -
  HUW51_RS08210 (HUW51_08205) - 1811747..1812367 (+) 621 WP_185273491.1 hypothetical protein -
  HUW51_RS08215 (HUW51_08210) radA 1812584..1813960 (+) 1377 WP_185273492.1 DNA repair protein RadA Machinery gene
  HUW51_RS08220 (HUW51_08215) - 1814805..1815833 (+) 1029 WP_185273493.1 SPASM domain-containing protein -
  HUW51_RS08225 (HUW51_08220) - 1815921..1816340 (+) 420 WP_185273494.1 DUF2007 domain-containing protein -
  HUW51_RS08230 (HUW51_08225) - 1816345..1817301 (+) 957 WP_185273495.1 mechanosensitive ion channel family protein -
  HUW51_RS08235 (HUW51_08230) - 1817400..1817732 (-) 333 WP_185273496.1 hypothetical protein -
  HUW51_RS08240 (HUW51_08235) - 1817975..1818424 (+) 450 WP_185273497.1 DUF4440 domain-containing protein -
  HUW51_RS08245 (HUW51_08240) - 1818507..1818695 (-) 189 WP_185273498.1 FeoB-associated Cys-rich membrane protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50184.56 Da        Isoelectric Point: 6.2699

>NTDB_id=456425 HUW51_RS08215 WP_185273492.1 1812584..1813960(+) (radA) [Adhaeribacter swui strain KCTC 52873]
MAKIKTSYFCQSCGAQSAKWIGRCPACGEWNTYVEEVLQREEAAGPASWKSSSSLQIANKPRPIAEISYSEELRLDTRDQ
ELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALNLKNQRVLYISGEESEQQIKMRAERLGAQHPNCFILTETGTQNIF
KQIEQLQPEVLIIDSIQTLHSAFIESGAGSISQVRECTAELLKYAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQF
EGDRHMTYRILRTTKNRFGSTSELGIYEMLGTGLRQVSNPSEILISQREENFSGITIGATLEGNRPLLIEVQSLVSPATY
GTPQRSSTGYDAKRLNMLLAVLEKRSGFKLGLQDVFLNIAGGIKVEDPAIDLAVCASILSSFEDLAIPHTTCFAAEVGLS
GEIRAVNRIDNRISEAEKLGFKEIYISKFNLKGIDQKKLGIKVNAVSKLEEVLSSLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=456425 HUW51_RS08215 WP_185273492.1 1812584..1813960(+) (radA) [Adhaeribacter swui strain KCTC 52873]
ATGGCGAAAATAAAAACCTCTTACTTCTGCCAGAGTTGTGGGGCGCAATCCGCAAAATGGATTGGTCGTTGCCCAGCTTG
TGGCGAATGGAATACCTACGTAGAAGAAGTACTGCAACGCGAAGAAGCAGCCGGACCAGCTTCCTGGAAATCCTCTTCGT
CGCTGCAAATAGCAAACAAACCCCGGCCTATTGCCGAAATCAGCTACTCCGAAGAATTGCGCCTGGATACCCGCGACCAG
GAATTAAACCGGGTTTTAGGCGGCGGCATTGTGCCGGGCTCCATGGTTTTAATTGGCGGCGAACCGGGCATTGGTAAATC
TACTTTAATGCTGCAGATTGCCTTAAATTTAAAAAATCAGCGGGTACTCTACATTTCCGGCGAAGAAAGCGAACAGCAAA
TAAAAATGCGGGCCGAACGCCTCGGTGCGCAACACCCCAACTGCTTTATTTTAACCGAAACCGGCACCCAAAATATATTC
AAGCAAATTGAGCAACTGCAGCCCGAAGTATTAATCATCGACTCCATCCAAACTTTGCATTCGGCTTTTATCGAAAGTGG
AGCGGGTAGTATTTCGCAGGTGCGGGAATGTACCGCCGAGTTGTTAAAATACGCTAAAGAAAGCGGTACGCCGGTGTTTT
TAATCGGCCATATAACCAAAGAAGGTAACCTGGCCGGCCCTAAAATTCTGGAGCACATGGTAGATACCGTATTGCAGTTC
GAAGGCGACCGCCACATGACTTACCGCATTTTACGTACCACGAAAAATCGTTTCGGTTCTACTTCCGAATTGGGCATTTA
CGAGATGCTGGGTACTGGTTTGCGGCAGGTTAGTAATCCTTCGGAGATATTAATTTCGCAGCGCGAAGAAAACTTTAGCG
GCATTACCATTGGCGCCACTCTAGAAGGCAATCGCCCTTTATTAATTGAAGTGCAAAGTTTGGTTAGCCCGGCTACCTAC
GGTACGCCGCAGCGTTCCAGTACTGGTTACGATGCCAAACGGTTAAATATGTTGCTGGCCGTATTGGAAAAACGCAGTGG
TTTTAAGTTAGGCTTGCAAGACGTATTTTTAAACATTGCAGGTGGCATTAAAGTAGAAGATCCGGCTATTGATTTAGCCG
TGTGTGCTTCCATCCTGTCGTCGTTTGAGGATTTAGCTATTCCGCATACTACCTGCTTTGCCGCCGAGGTAGGCTTAAGT
GGCGAGATCCGGGCCGTAAACCGCATCGACAACCGCATCAGCGAAGCCGAAAAGCTGGGTTTTAAAGAAATTTACATTTC
TAAGTTTAATTTAAAAGGCATCGACCAGAAGAAATTAGGTATAAAAGTAAACGCGGTAAGTAAACTGGAGGAAGTTTTAA
GTTCTCTTTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7G6D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.609

100

0.528
  radA Streptococcus pneumoniae Rx1

50.98

100

0.511
  radA Streptococcus pneumoniae D39

50.98

100

0.511
  radA Streptococcus pneumoniae R6

50.98

100

0.511
  radA Streptococcus pneumoniae TIGR4

50.98

100

0.511
  radA Streptococcus mitis NCTC 12261

50.98

100

0.511
  radA Streptococcus mitis SK321

50.763

100

0.509