Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   JEK78_RS13360 Genome accession   NZ_CP066801
Coordinates   3127485..3128483 (-) Length   332 a.a.
NCBI ID   WP_200258772.1    Uniprot ID   -
Organism   Streptomyces sp. HSG2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3122485..3133483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEK78_RS13340 - 3122613..3124355 (-) 1743 WP_200264119.1 IS1182 family transposase -
  JEK78_RS13345 - 3124416..3124871 (-) 456 WP_200258767.1 recombinase family protein -
  JEK78_RS13350 - 3125230..3126525 (+) 1296 WP_200258769.1 ISAs1 family transposase -
  JEK78_RS13355 - 3126526..3127212 (-) 687 WP_200264148.1 TetR/AcrR family transcriptional regulator -
  JEK78_RS13360 rpoS 3127485..3128483 (-) 999 WP_200258772.1 sigma-70 family RNA polymerase sigma factor Regulator
  JEK78_RS13365 - 3128698..3129228 (+) 531 WP_200258775.1 GNAT family N-acetyltransferase -
  JEK78_RS13370 - 3129349..3130893 (-) 1545 WP_200258778.1 MFS transporter -
  JEK78_RS13375 - 3131250..3131897 (-) 648 WP_200258780.1 TetR/AcrR family transcriptional regulator -
  JEK78_RS13380 - 3132190..3133470 (+) 1281 WP_200258782.1 M6 family metalloprotease domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37084.86 Da        Isoelectric Point: 5.0571

>NTDB_id=456385 JEK78_RS13360 WP_200258772.1 3127485..3128483(-) (rpoS) [Streptomyces sp. HSG2]
MATRAVARRKSAAGETTDAATSVRANGGELADRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVFARQVLEGDERTAAD
ASREELAALVEAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRIQREYNREHGREPEPAEIAAELASTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIGRLDPRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=456385 JEK78_RS13360 WP_200258772.1 3127485..3128483(-) (rpoS) [Streptomyces sp. HSG2]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCGCCGGCGAGACGACCGACGCGGCAACCAGCGTCCGCGCCAACGG
CGGCGAGCTCGCCGACCGGGATCTGGTCGGCATGTACCTCGACGAAATCGCGCGGACCCCGTTGCTCGACGCCGCCAGAG
AGGTCGAACTGTCCCAGATCATCGAAGCGGGCGTCTTCGCGCGGCAGGTCCTGGAGGGCGACGAGCGGACCGCGGCGGAC
GCCAGCCGGGAGGAGCTGGCGGCCCTGGTCGAAGCGGGCGAGCGGGCCAAGGACGTGTTCATCCGCTCCAACCTCCGGCT
GGTCGTCGCGGTGGCTCGACGCTATCCCCGCAGCGGCCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCAGGCAGGCCATC
ACGCGGTCGATCGCCGACCAGTCGCGGACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTGGGCCGGATTCGCCGGAT
CCAGCGCGAGTACAACCGCGAGCACGGTCGTGAGCCGGAGCCCGCCGAGATCGCCGCCGAGTTGGCCTCCACCCCGGAGA
GGGTCACGGACGTGCTCGACTGGGCCCGCGACCCGGTGTCGTTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGTTGGAGGACACCTCCGCGGTGTCTCCCGAGCAGTCCGTGTTGACGCTGCTGCGCAGCGAGGAACTCGACGG
TCTCATCGGGCGCCTCGACCCGCGCACCGCCTCGATCATCAAGATGCGCTATGGCATAGAGGACGGCAGGGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACCCGGGAGAGGATTCGGCAGATCGAGAAGCACGCTCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGGTTCGAGGCCGCCGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.803

90.06

0.367