Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ80_RS15880 Genome accession   NZ_CP055119
Coordinates   3205684..3206280 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SWHIN_100     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3200684..3211280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ80_RS15865 (HUZ80_15835) helD 3200892..3202946 (-) 2055 WP_004179218.1 DNA helicase IV -
  HUZ80_RS15870 (HUZ80_15840) - 3203071..3203517 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HUZ80_RS15875 (HUZ80_15845) yccS 3203535..3205670 (+) 2136 WP_023316617.1 YccS family putative transporter -
  HUZ80_RS15880 (HUZ80_15850) sxy/tfoX 3205684..3206280 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HUZ80_RS15885 (HUZ80_15855) sulA 3206629..3207138 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HUZ80_RS15890 (HUZ80_15860) ompA 3207491..3208561 (+) 1071 WP_002898408.1 porin OmpA -
  HUZ80_RS15895 (HUZ80_15865) matP 3208693..3209145 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HUZ80_RS15900 (HUZ80_15870) - 3209331..3211088 (+) 1758 WP_065803627.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=456352 HUZ80_RS15880 WP_004179217.1 3205684..3206280(-) (sxy/tfoX) [Klebsiella pneumoniae strain SWHIN_100]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=456352 HUZ80_RS15880 WP_004179217.1 3205684..3206280(-) (sxy/tfoX) [Klebsiella pneumoniae strain SWHIN_100]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51