Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ81_RS06055 Genome accession   NZ_CP055113
Coordinates   1221832..1222461 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain SWHIN_101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216832..1227461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ81_RS06040 (HUZ81_05990) helD 1217074..1219128 (-) 2055 WP_001593270.1 DNA helicase IV -
  HUZ81_RS06045 (HUZ81_05995) - 1219251..1219697 (+) 447 WP_001261231.1 YccF domain-containing protein -
  HUZ81_RS06050 (HUZ81_06000) yccS 1219707..1221869 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HUZ81_RS06055 (HUZ81_06005) sxy/tfoX 1221832..1222461 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ81_RS06060 (HUZ81_06010) sulA 1222680..1223189 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ81_RS06065 (HUZ81_06015) ompA 1223546..1224586 (+) 1041 WP_000750416.1 porin OmpA -
  HUZ81_RS06070 (HUZ81_06020) matP 1224662..1225114 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ81_RS06075 (HUZ81_06025) - 1225300..1227060 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456319 HUZ81_RS06055 WP_000839153.1 1221832..1222461(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_101]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456319 HUZ81_RS06055 WP_000839153.1 1221832..1222461(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_101]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1