Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ82_RS13800 Genome accession   NZ_CP055109
Coordinates   2868249..2868878 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain SWHIN_104     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863249..2873878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ82_RS13785 (HUZ82_13710) helD 2863491..2865545 (-) 2055 WP_000420536.1 DNA helicase IV -
  HUZ82_RS13790 (HUZ82_13715) - 2865668..2866114 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ82_RS13795 (HUZ82_13720) yccS 2866124..2868286 (+) 2163 WP_000875019.1 YccS family putative transporter -
  HUZ82_RS13800 (HUZ82_13725) sxy/tfoX 2868249..2868878 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ82_RS13805 (HUZ82_13730) sulA 2869097..2869606 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ82_RS13810 (HUZ82_13735) ompA 2869963..2871015 (+) 1053 WP_072833035.1 porin OmpA -
  HUZ82_RS13815 (HUZ82_13740) matP 2871090..2871542 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HUZ82_RS13820 (HUZ82_13745) - 2871728..2873488 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456307 HUZ82_RS13800 WP_000839153.1 2868249..2868878(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_104]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456307 HUZ82_RS13800 WP_000839153.1 2868249..2868878(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_104]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1