Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ83_RS16070 Genome accession   NZ_CP055106
Coordinates   3238519..3239115 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain SWHIN_106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233519..3244115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ83_RS16055 (HUZ83_16020) helD 3233727..3235781 (-) 2055 WP_004179218.1 DNA helicase IV -
  HUZ83_RS16060 (HUZ83_16025) - 3235906..3236352 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HUZ83_RS16065 (HUZ83_16030) yccS 3236370..3238505 (+) 2136 WP_023316617.1 YccS family putative transporter -
  HUZ83_RS16070 (HUZ83_16035) sxy/tfoX 3238519..3239115 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HUZ83_RS16075 (HUZ83_16040) sulA 3239464..3239973 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HUZ83_RS16080 (HUZ83_16045) ompA 3240326..3241396 (+) 1071 WP_002898408.1 porin OmpA -
  HUZ83_RS16085 (HUZ83_16050) matP 3241528..3241980 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HUZ83_RS16090 (HUZ83_16055) - 3242166..3243923 (+) 1758 WP_065803627.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=456284 HUZ83_RS16070 WP_004179217.1 3238519..3239115(-) (sxy/tfoX) [Klebsiella pneumoniae strain SWHIN_106]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=456284 HUZ83_RS16070 WP_004179217.1 3238519..3239115(-) (sxy/tfoX) [Klebsiella pneumoniae strain SWHIN_106]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51