Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ84_RS13980 Genome accession   NZ_CP055099
Coordinates   2893014..2893643 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri strain SWHIN_107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2888014..2898643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ84_RS13965 (HUZ84_13895) helD 2888256..2890310 (-) 2055 WP_000420536.1 DNA helicase IV -
  HUZ84_RS13970 (HUZ84_13900) - 2890433..2890879 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ84_RS13975 (HUZ84_13905) yccS 2890889..2893051 (+) 2163 WP_000875019.1 YccS family putative transporter -
  HUZ84_RS13980 (HUZ84_13910) sxy/tfoX 2893014..2893643 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ84_RS13985 (HUZ84_13915) sulA 2893862..2894371 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ84_RS13990 (HUZ84_13920) ompA 2894728..2895780 (+) 1053 WP_072833035.1 porin OmpA -
  HUZ84_RS13995 (HUZ84_13925) matP 2895855..2896307 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HUZ84_RS14000 (HUZ84_13930) - 2896493..2898253 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=456261 HUZ84_RS13980 WP_000839153.1 2893014..2893643(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_107]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456261 HUZ84_RS13980 WP_000839153.1 2893014..2893643(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_107]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1