Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ88_RS08485 Genome accession   NZ_CP055089
Coordinates   1784143..1784757 (+) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain SWHIN_111     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779143..1789757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ88_RS08465 (HUZ88_08425) - 1779513..1781273 (-) 1761 WP_239606317.1 Lon protease family protein -
  HUZ88_RS08470 (HUZ88_08430) matP 1781459..1781911 (+) 453 WP_032942905.1 macrodomain Ter protein MatP -
  HUZ88_RS08475 (HUZ88_08435) ompA 1782000..1783058 (-) 1059 WP_239606318.1 porin OmpA -
  HUZ88_RS08480 (HUZ88_08440) sulA 1783416..1783925 (-) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  HUZ88_RS08485 (HUZ88_08445) sxy/tfoX 1784143..1784757 (+) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  HUZ88_RS08490 (HUZ88_08450) yccS 1784735..1786888 (-) 2154 WP_003831997.1 YccS family putative transporter -
  HUZ88_RS08495 (HUZ88_08455) - 1786907..1787353 (-) 447 WP_239606319.1 YccF domain-containing protein -
  HUZ88_RS08500 (HUZ88_08460) helD 1787479..1789533 (+) 2055 WP_048214504.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=456163 HUZ88_RS08485 WP_003831996.1 1784143..1784757(+) (sxy/tfoX) [Citrobacter portucalensis strain SWHIN_111]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=456163 HUZ88_RS08485 WP_003831996.1 1784143..1784757(+) (sxy/tfoX) [Citrobacter portucalensis strain SWHIN_111]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCATTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACTATGCGGTCGTTAGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676