Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ90_RS14465 Genome accession   NZ_CP055075
Coordinates   2935276..2935905 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Shigella flexneri strain SWHIN_116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930276..2940905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ90_RS14450 (HUZ90_14340) helD 2930518..2932572 (-) 2055 WP_087898012.1 DNA helicase IV -
  HUZ90_RS14455 (HUZ90_14345) - 2932695..2933141 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ90_RS14460 (HUZ90_14350) yccS 2933151..2935313 (+) 2163 WP_023281787.1 YccS family putative transporter -
  HUZ90_RS14465 (HUZ90_14355) sxy/tfoX 2935276..2935905 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ90_RS14470 (HUZ90_14360) sulA 2936124..2936633 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ90_RS14475 (HUZ90_14365) ompA 2936990..2938030 (+) 1041 WP_000750416.1 porin OmpA -
  HUZ90_RS14480 (HUZ90_14370) matP 2938106..2938558 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ90_RS14485 (HUZ90_14375) - 2938744..2940504 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=456126 HUZ90_RS14465 WP_000839152.1 2935276..2935905(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_116]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456126 HUZ90_RS14465 WP_000839152.1 2935276..2935905(-) (sxy/tfoX) [Shigella flexneri strain SWHIN_116]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995