Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ65_RS10175 Genome accession   NZ_CP055063
Coordinates   2211876..2212505 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Shigella dysenteriae strain SWHE2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206876..2217505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ65_RS10155 (HUZ65_10080) - 2207264..2209024 (-) 1761 WP_001612759.1 Lon protease family protein -
  HUZ65_RS10160 (HUZ65_10085) matP 2209210..2209662 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ65_RS10165 (HUZ65_10090) ompA 2209739..2210791 (-) 1053 WP_001307702.1 porin OmpA -
  HUZ65_RS10170 (HUZ65_10095) sulA 2211148..2211657 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  HUZ65_RS10175 (HUZ65_10100) sxy/tfoX 2211876..2212505 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ65_RS10180 (HUZ65_10105) yccS 2212468..2214630 (-) 2163 WP_000323868.1 YccS family putative transporter -
  HUZ65_RS10185 (HUZ65_10110) - 2214640..2215086 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ65_RS10190 (HUZ65_10115) helD 2215209..2217263 (+) 2055 WP_021577221.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=456054 HUZ65_RS10175 WP_001612760.1 2211876..2212505(+) (sxy/tfoX) [Shigella dysenteriae strain SWHE2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=456054 HUZ65_RS10175 WP_001612760.1 2211876..2212505(+) (sxy/tfoX) [Shigella dysenteriae strain SWHE2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995