Detailed information NTG0456014

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUZ67_RS21620
• Genome accession: NZ_CP055057
• Coordinates: 4357513..4358313 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SWHE4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4352513..4363313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ67_RS21585 (HUZ67_21525)	gspH	4352669..4353184 (+)	516	WP_064178894.1	type II secretion system minor pseudopilin GspH	-
HUZ67_RS21590 (HUZ67_21530)	gspI	4353181..4353546 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HUZ67_RS21595 (HUZ67_21535)	gspJ	4353543..4354139 (+)	597	WP_004191953.1	type II secretion system minor pseudopilin GspJ	-
HUZ67_RS21600 (HUZ67_21540)	gspK	4354136..4355122 (+)	987	WP_077255670.1	type II secretion system minor pseudopilin GspK	-
HUZ67_RS21605 (HUZ67_21545)	gspL	4355109..4356302 (+)	1194	WP_040164727.1	type II secretion system protein GspL	-
HUZ67_RS21610 (HUZ67_21550)	-	4356295..4356780 (+)	486	WP_004145896.1	type II secretion system protein M	-
HUZ67_RS21615 (HUZ67_21555)	-	4356770..4357516 (+)	747	WP_004145897.1	type II secretion system protein N	-
HUZ67_RS21620 (HUZ67_21560)	pilD	4357513..4358313 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
HUZ67_RS21625 (HUZ67_21565)	hrpB	4358361..4360790 (-)	2430	WP_070984587.1	ATP-dependent helicase HrpB	-
HUZ67_RS21630 (HUZ67_21570)	thpR	4360863..4361399 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HUZ67_RS21635 (HUZ67_21575)	sfsA	4361399..4362115 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HUZ67_RS21640 (HUZ67_21580)	dksA	4362278..4362733 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=456014 HUZ67_RS21620 WP_002888947.1 4357513..4358313(+) (pilD) [Klebsiella pneumoniae strain SWHE4]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=456014 HUZ67_RS21620 WP_002888947.1 4357513..4358313(+) (pilD) [Klebsiella pneumoniae strain SWHE4]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCACTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425