Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   JG535_RS03035 Genome accession   NZ_CP066746
Coordinates   591522..591905 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586522..596905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG535_RS03015 (JG535_03015) - 586601..588535 (-) 1935 WP_002856931.1 ribonuclease R family protein -
  JG535_RS03020 (JG535_03020) ilvC 588654..589676 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  JG535_RS03025 (JG535_03025) - 589680..590762 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  JG535_RS03030 (JG535_03030) dprA 590752..591525 (+) 774 WP_002857196.1 DNA-processing protein DprA Machinery gene
  JG535_RS03035 (JG535_03035) dprB 591522..591905 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  JG535_RS03040 (JG535_03040) - 591934..592773 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JG535_RS03045 (JG535_03045) msrA 592949..593446 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JG535_RS03050 (JG535_03050) ppa 593487..594005 (-) 519 WP_199398783.1 inorganic diphosphatase -
  JG535_RS03055 (JG535_03055) adk 594015..594593 (-) 579 WP_002855137.1 adenylate kinase -
  JG535_RS03060 (JG535_03060) aspS 594590..596341 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=455998 JG535_RS03035 WP_002856861.1 591522..591905(+) (dprB) [Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=455998 JG535_RS03035 WP_002856861.1 591522..591905(+) (dprB) [Campylobacter jejuni strain CJP19-D445 isolate CFSAN091031]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449