Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ69_RS08570 Genome accession   NZ_CP055052
Coordinates   1805530..1806159 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Shigella dysenteriae strain SWHEFF_51     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800530..1811159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ69_RS08550 (HUZ69_08460) - 1800918..1802678 (-) 1761 WP_239594107.1 AAA family ATPase -
  HUZ69_RS08555 (HUZ69_08465) matP 1802864..1803316 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ69_RS08560 (HUZ69_08470) ompA 1803393..1804445 (-) 1053 WP_001307702.1 porin OmpA -
  HUZ69_RS08565 (HUZ69_08475) sulA 1804802..1805311 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ69_RS08570 (HUZ69_08480) sxy/tfoX 1805530..1806159 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ69_RS08575 (HUZ69_08485) yccS 1806122..1808284 (-) 2163 WP_000323868.1 YccS family putative transporter -
  HUZ69_RS08580 (HUZ69_08490) - 1808294..1808740 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ69_RS08585 (HUZ69_08495) helD 1808863..1810917 (+) 2055 WP_021577221.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=455957 HUZ69_RS08570 WP_001612760.1 1805530..1806159(+) (sxy/tfoX) [Shigella dysenteriae strain SWHEFF_51]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455957 HUZ69_RS08570 WP_001612760.1 1805530..1806159(+) (sxy/tfoX) [Shigella dysenteriae strain SWHEFF_51]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995