Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   JG534_RS03440 Genome accession   NZ_CP066745
Coordinates   646908..647291 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 641908..652291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JG534_RS03420 (JG534_03420) - 641987..643921 (-) 1935 WP_002868433.1 ribonuclease R family protein -
  JG534_RS03425 (JG534_03425) ilvC 644040..645062 (+) 1023 WP_002868432.1 ketol-acid reductoisomerase -
  JG534_RS03430 (JG534_03430) - 645066..646148 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  JG534_RS03435 (JG534_03435) dprA 646138..646911 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  JG534_RS03440 (JG534_03440) dprB 646908..647291 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  JG534_RS03445 (JG534_03445) - 647320..648159 (+) 840 WP_072223322.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  JG534_RS03450 (JG534_03450) msrA 648335..648832 (-) 498 WP_002868429.1 peptide-methionine (S)-S-oxide reductase MsrA -
  JG534_RS03455 (JG534_03455) ppa 648873..649391 (-) 519 WP_002867724.1 inorganic diphosphatase -
  JG534_RS03460 (JG534_03460) adk 649401..649979 (-) 579 WP_002868428.1 adenylate kinase -
  JG534_RS03465 (JG534_03465) aspS 649976..651727 (-) 1752 WP_002868427.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=455953 JG534_RS03440 WP_002852281.1 646908..647291(+) (dprB) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=455953 JG534_RS03440 WP_002852281.1 646908..647291(+) (dprB) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449