Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ72_RS14440 Genome accession   NZ_CP055037
Coordinates   2960059..2960688 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Shigella flexneri strain SWHEFF_60     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955059..2965688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ72_RS14425 (HUZ72_14325) helD 2955301..2957355 (-) 2055 WP_033554506.1 DNA helicase IV -
  HUZ72_RS14430 (HUZ72_14330) - 2957478..2957924 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ72_RS14435 (HUZ72_14335) yccS 2957934..2960096 (+) 2163 WP_023281787.1 YccS family putative transporter -
  HUZ72_RS14440 (HUZ72_14340) sxy/tfoX 2960059..2960688 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ72_RS14445 (HUZ72_14345) sulA 2960907..2961416 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ72_RS14450 (HUZ72_14350) ompA 2961773..2962813 (+) 1041 WP_000750416.1 porin OmpA -
  HUZ72_RS14455 (HUZ72_14355) matP 2962889..2963341 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ72_RS14460 (HUZ72_14360) - 2963527..2965287 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=455900 HUZ72_RS14440 WP_000839152.1 2960059..2960688(-) (sxy/tfoX) [Shigella flexneri strain SWHEFF_60]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455900 HUZ72_RS14440 WP_000839152.1 2960059..2960688(-) (sxy/tfoX) [Shigella flexneri strain SWHEFF_60]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995