Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ75_RS13845 Genome accession   NZ_CP055024
Coordinates   2833496..2834125 (-) Length   209 a.a.
NCBI ID   WP_072712306.1    Uniprot ID   -
Organism   Shigella flexneri strain SWHEFF_67     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828496..2839125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ75_RS13830 (HUZ75_13750) helD 2828738..2830792 (-) 2055 WP_001295354.1 DNA helicase IV -
  HUZ75_RS13835 (HUZ75_13755) - 2830915..2831361 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ75_RS13840 (HUZ75_13760) yccS 2831371..2833533 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HUZ75_RS13845 (HUZ75_13765) sxy/tfoX 2833496..2834125 (-) 630 WP_072712306.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ75_RS13850 (HUZ75_13770) sulA 2834344..2834853 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ75_RS13855 (HUZ75_13775) ompA 2835210..2836250 (+) 1041 WP_000750416.1 porin OmpA -
  HUZ75_RS13860 (HUZ75_13780) matP 2836326..2836778 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ75_RS13865 (HUZ75_13785) - 2836964..2838724 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=455832 HUZ75_RS13845 WP_072712306.1 2833496..2834125(-) (sxy/tfoX) [Shigella flexneri strain SWHEFF_67]
MKSLSYKRIYKSQQYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455832 HUZ75_RS13845 WP_072712306.1 2833496..2834125(-) (sxy/tfoX) [Shigella flexneri strain SWHEFF_67]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAACAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995