Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I5P57_RS08675 Genome accession   NZ_CP066740
Coordinates   1817043..1818470 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain R12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812043..1823470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P57_RS08640 hisL 1812627..1812677 (-) 51 WP_001364200.1 his operon leader peptide -
  I5P57_RS08645 (I5P57_01703) yefM 1812960..1813211 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I5P57_RS08650 (I5P57_01704) yoeB 1813208..1813462 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I5P57_RS08655 (I5P57_01705) yeeZ 1813545..1814369 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I5P57_RS08660 (I5P57_01706) yeeY 1814415..1815344 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  I5P57_RS08665 yoeI 1815559..1815621 (+) 63 WP_010723108.1 membrane protein YoeI -
  I5P57_RS08670 (I5P57_01707) plaP 1815611..1816969 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I5P57_RS08675 (I5P57_01708) sbcB 1817043..1818470 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  I5P57_RS08680 (I5P57_01709) dacD 1818679..1819845 (+) 1167 WP_001764651.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I5P57_RS08685 (I5P57_01710) sbmC 1819964..1820437 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I5P57_RS08690 (I5P57_01711) yeeA 1820635..1821693 (+) 1059 WP_001200890.1 FUSC family protein -
  I5P57_RS08695 (I5P57_01712) tmaR 1821864..1822193 (+) 330 WP_000450409.1 DUF496 family protein -
  I5P57_RS08700 (I5P57_01713) - 1822293..1822736 (-) 444 WP_001189435.1 EutP/PduV family microcompartment system protein -
  I5P57_RS08705 (I5P57_01714) pduU 1822741..1823091 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=455807 I5P57_RS08675 WP_000980557.1 1817043..1818470(-) (sbcB) [Escherichia coli strain R12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=455807 I5P57_RS08675 WP_000980557.1 1817043..1818470(-) (sbcB) [Escherichia coli strain R12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583