Detailed information NTG0455794

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I5P57_RS05075
• Genome accession: NZ_CP066740
• Coordinates: 1060238..1061230 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1055238..1066230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5P57_RS05045 (I5P57_00991)	ispD	1055299..1056009 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I5P57_RS05050 (I5P57_00992)	ispF	1056009..1056488 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I5P57_RS05055 (I5P57_00993)	truD	1056485..1057534 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I5P57_RS05060 (I5P57_00994)	surE	1057515..1058276 (+)	762	WP_001765074.1	5'/3'-nucleotidase SurE	-
I5P57_RS05065 (I5P57_00995)	pcm	1058270..1058896 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I5P57_RS05070 (I5P57_00996)	nlpD	1059081..1060175 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I5P57_RS05075 (I5P57_00997)	rpoS	1060238..1061230 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I5P57_RS05080 (I5P57_00998)	-	1061408..1061959 (-)	552	WP_001179442.1	flavodoxin family protein	-
I5P57_RS05085 (I5P57_00999)	-	1062184..1063227 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I5P57_RS05090 (I5P57_01000)	ygbN	1063370..1064734 (-)	1365	WP_000104433.1	GntP family transporter	-
I5P57_RS05095 (I5P57_01001)	ygbM	1064823..1065599 (-)	777	WP_001357575.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=455794 I5P57_RS05075 WP_000081550.1 1060238..1061230(+) (rpoS) [Escherichia coli strain R12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=455794 I5P57_RS05075 WP_000081550.1 1060238..1061230(+) (rpoS) [Escherichia coli strain R12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715