Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JFJ84_RS06860 Genome accession   NZ_CP066739
Coordinates   1437497..1440328 (-) Length   943 a.a.
NCBI ID   WP_012340239.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432497..1445328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS06840 (JFJ84_06835) - 1433948..1434622 (+) 675 WP_012340242.1 SPOR domain-containing protein -
  JFJ84_RS06845 (JFJ84_06840) mreD 1434648..1435136 (-) 489 WP_011609280.1 rod shape-determining protein MreD -
  JFJ84_RS06850 (JFJ84_06845) mreC 1435136..1436188 (-) 1053 WP_012340241.1 rod shape-determining protein MreC -
  JFJ84_RS06855 (JFJ84_06850) - 1436270..1437325 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFJ84_RS06860 (JFJ84_06855) uvrA 1437497..1440328 (-) 2832 WP_012340239.1 excinuclease ABC subunit UvrA Machinery gene
  JFJ84_RS06865 (JFJ84_06860) ssb 1440507..1440971 (+) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  JFJ84_RS06870 (JFJ84_06865) metF 1441058..1441942 (-) 885 WP_012340238.1 methylenetetrahydrofolate reductase -
  JFJ84_RS06875 (JFJ84_06870) - 1442153..1442671 (-) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  JFJ84_RS06880 (JFJ84_06875) nagZ 1442700..1443746 (-) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  JFJ84_RS06885 (JFJ84_06880) - 1443753..1444109 (-) 357 WP_012340235.1 YcfL family protein -
  JFJ84_RS06890 (JFJ84_06885) hinT 1444109..1444459 (-) 351 WP_012340234.1 purine nucleoside phosphoramidase -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104290.16 Da        Isoelectric Point: 6.7093

>NTDB_id=455758 JFJ84_RS06860 WP_012340239.1 1437497..1440328(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-069]
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKIMLLAPVVKNRKG
EHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENS
QVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQM
LMSLAKHYDFDIELPFEKLPKKIQQIILNGSGDEEIEFQYMNDRGDVVLRHHSFEGILNNMARRYKETESMSVREELSKN
ISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDI
GPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFF
DAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRD
KGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=455758 JFJ84_RS06860 WP_012340239.1 1437497..1440328(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGGAAAAAATTGATATTCGTGGGGCAAGAACTCACAATCTAAAAAATATAAGTTTAACAATTCCTCGTAACAAACTTGT
TGTAATTACGGGGCTGTCTGGTTCAGGAAAGTCTTCTTTGGCTTTTGATACGTTATATGCAGAGGGGCAACGCCGTTATG
TAGAGTCATTGTCTGCCTACGCTCGCCAATTTTTATCTTTAATGGAAAAACCCGATGTTGATCATATTGAAGGATTATCT
CCGGCTATTTCTATTGAACAAAAATCCACTTCTCATAATCCTCGCTCAACAGTGGGAACGATTACTGAAATTCATGATTA
TTTGCGTTTATTGTTTGCTCGAGTAGGTGAGCCGAGATGCCCAGAACATCATGTTACATTAAGCGTGCAAACTATTAGCC
AAATGGTTGATAAAGTACTGAGTTTGCCGGAAGAAAGTAAGATTATGTTACTTGCACCGGTGGTCAAAAATCGTAAAGGC
GAGCATATCAAAATTTTAGAAAATATTGCCGCACAAGGCTATATTCGGGCAAGGATTGATGGTGAAATTTGCGATTTATC
GGATCCGCCTAAATTAGAATTACAGAAAAAACATACAATTGAAGTGGTGGTTGATCGCTTTAAAGTGCGGTCTGATTTGG
CTACTCGTTTGGCTGAATCTTTTGAAACAGCGTTAGAGTTGTCCGGTGGGACAGCAATCGTTGCGGATATGGAGAATTCG
CAAGTGGAAGAATTGATTTTTTCCGCTAATTTTGCTTGCCCTCATTGTGGTTATTCTATCCCTGAATTAGAGCCGAGGTT
GTTTTCTTTTAATAATCCTGCCGGTGCTTGTTCTACTTGTGACGGTTTAGGCGTGCAACAATATTTTGATGAAAAACGTG
TTGTACAAAACGCATCGATTTCTTTAGCCGGTGGAGCGATAAAAGGGTGGGATCGGCGTAATTTTTATTATTACCAAATG
TTGATGTCTTTAGCTAAGCACTATGATTTTGATATTGAACTACCTTTTGAAAAGTTACCGAAAAAAATTCAGCAAATTAT
CTTAAACGGTTCAGGTGACGAGGAAATTGAATTTCAATATATGAACGATCGTGGTGATGTTGTTCTTCGCCATCATAGTT
TTGAGGGGATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGTCTGTACGAGAGGAATTGTCCAAAAAT
ATTAGTAGTCGACCTTGTGTAGATTGTTGCGGTTCGAGATTACGTTCGGAAGCTCGCCATGTTTATATCGGTGAAGCTAA
TTTACCTGATGTATCAGAGAAAAGTATCGGAGAAGCACTCAATTTTATTGATAACCTGACATTGACGGGACAACGTGGAC
AAATTGCAGACAAAATTCTGAAAGAGATTAAAGAGCGGTTACAATTTTTAGTGAATGTGGGGCTGAGTTATTTATCTTTA
TCTCGTTCAGCGGAAACTTTATCCGGTGGAGAAGCACAGCGTATTCGTTTGGCAAGTCAAATTGGTGCAGGATTAGTTGG
AGTAATGTATGTACTTGATGAACCCTCAATCGGTTTACACCAACGAGATAATGAGCGTTTATTAAATACTTTGTTGCATT
TGCGTAATCTAGGCAACACAGTGATTGTGGTTGAACATGATGAAGATGCTATCATGGCAGCTGATCATATTATTGATATT
GGTCCCGGAGCCGGTGTGCATGGAGGAAATGTTGTTGCACAAGGTAATGCACAAGAAATTATGGCTAATCCAAATTCTTT
AACAGGTAACTTCTTGTCAGGTAAGGAAAAAATTGAAATTCCGCTGAAACGAACCGCAGTTGATAAGCAAAAAATGCTTA
GATTAAAAGGAGCAAGCGGTAATAACCTGAAACAGGTGAATTTGGATATTCCCGTTGGTTTATTTACCTGTGTAACAGGT
GTATCCGGTTCGGGAAAATCTACTTTAATCAATGATACTTTATTTCCATTGGCTCAAAATGCGTTAAATCGTGCGGAAAA
TTCCCAGTTTGCACCTTATCAATCAATTGAGGGACTTGAGTTTTTTGACAAAGTGATCGATATAGATCAAAGTCCGATAG
GTAGAACGCCTCGTTCCAATCCTGCAACCTATACAGGGTTATTTACGCCAATTCGTGAGTTATTTTCCGGCGTGCCGGAG
GCTCGAGCGAGAGGTTATAATCCGGGGAGATTCAGTTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGTCAAGGTGATGG
CGTTATCAAGGTTGAAATGCACTTTTTACCTGATGTTTATGTGCCTTGTGATCAATGTAAAGGTAAGCGTTATAATCGAG
AAACGTTGGAAATTCGTTACAAAGGCAAAACTATCCATCAAGTGCTTGATATGACAGTAGAAGAAGCACGAGTGTTTTTT
GATGCTATTCCAATGGTAGCTCGTAAATTACAAACGTTGATTGATGTTGGTTTATCCTATATTCGTTTAGGTCAATCTTC
GACAACCTTGTCCGGCGGAGAGGCTCAAAGAGTTAAATTAGCAACAGAGCTTTCTAAACGAGATACAGGGAAGACGTTAT
ACATTTTAGATGAACCGACTACAGGATTACATTTTGCCGATATTAAACAACTCCTGACCGTCTTACATTGTTTACGTGAT
AAGGGAAATACCATAGTGGTAATTGAACATAATCTCGATGTAATAAAAACCGCTGACTGGATCGTTGATTTAGGACCGGA
AGGGGGAAATGGTGGAGGACAAATTATTGCTACCGGCACGCCGGAAGAGGTTTGCCTAGTTGAAGGATCTCATACGGCGA
GATTTTTAAAAACTATGTTGGCTAAAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.946

100

0.569
  uvrA Streptococcus pneumoniae TIGR4

56.946

100

0.569
  uvrA Streptococcus pneumoniae D39

56.946

100

0.569