Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JFJ84_RS05490 Genome accession   NZ_CP066739
Coordinates   1129272..1130702 (-) Length   476 a.a.
NCBI ID   WP_012340505.1    Uniprot ID   A0A263HE61
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124272..1135702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS05460 (JFJ84_05455) infC 1125180..1125722 (+) 543 WP_075290620.1 translation initiation factor IF-3 -
  JFJ84_RS05465 (JFJ84_05460) rpmI 1125821..1126018 (+) 198 WP_011609029.1 50S ribosomal protein L35 -
  JFJ84_RS05470 (JFJ84_05465) rplT 1126089..1126442 (+) 354 WP_011609028.1 50S ribosomal protein L20 -
  JFJ84_RS05475 (JFJ84_05470) - 1126615..1127220 (-) 606 WP_012340507.1 DedA family protein -
  JFJ84_RS05480 (JFJ84_05475) rplY 1127441..1127728 (+) 288 WP_011609026.1 50S ribosomal protein L25 -
  JFJ84_RS05485 (JFJ84_05480) - 1128742..1129161 (-) 420 WP_012340506.1 hypothetical protein -
  JFJ84_RS05490 (JFJ84_05485) sbcB 1129272..1130702 (-) 1431 WP_012340505.1 exodeoxyribonuclease I Machinery gene
  JFJ84_RS05495 (JFJ84_05490) - 1130745..1133802 (-) 3058 Protein_1079 type I restriction endonuclease subunit R -
  JFJ84_RS05500 (JFJ84_05495) - 1133932..1134456 (-) 525 WP_075293869.1 transposase -
  JFJ84_RS10775 - 1134524..1135229 (-) 706 Protein_1081 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55741.45 Da        Isoelectric Point: 5.9631

>NTDB_id=455748 JFJ84_RS05490 WP_012340505.1 1129272..1130702(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-069]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNGIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
IPDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLRKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=455748 JFJ84_RS05490 WP_012340505.1 1129272..1130702(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCTGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCGGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAATTTTAGCTGAATTTAGTCACCCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAGGTAAATGGTATAGAGCATGGTAATGCTCATGATGCAATGGCTGATGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAGTTATACAATCAGTTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCCCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTGGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTCGTAAGTTATATTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263HE61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.277

97.059

0.546