Detailed information NTG0455746

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUZ79_RS21565
• Genome accession: NZ_CP055010
• Coordinates: 4390258..4391058 (+)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain SWHEFF_72
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4385258..4396058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ79_RS21530 (HUZ79_21485)	gspH	4385411..4385926 (+)	516	WP_064187722.1	type II secretion system minor pseudopilin GspH	-
HUZ79_RS21535 (HUZ79_21490)	gspI	4385923..4386288 (+)	366	WP_064187721.1	type II secretion system minor pseudopilin GspI	-
HUZ79_RS21540 (HUZ79_21495)	gspJ	4386285..4386881 (+)	597	WP_048323018.1	type II secretion system minor pseudopilin GspJ	-
HUZ79_RS21545 (HUZ79_21500)	gspK	4386878..4387858 (+)	981	WP_077268679.1	type II secretion system minor pseudopilin GspK	-
HUZ79_RS21550 (HUZ79_21505)	gspL	4387851..4389047 (+)	1197	WP_064187719.1	type II secretion system protein GspL	-
HUZ79_RS21555 (HUZ79_21510)	-	4389040..4389525 (+)	486	WP_043521988.1	type II secretion system protein M	-
HUZ79_RS21560 (HUZ79_21515)	-	4389515..4390243 (+)	729	WP_064178512.1	type II secretion system protein N	-
HUZ79_RS21565 (HUZ79_21520)	pilD	4390258..4391058 (+)	801	WP_049116597.1	A24 family peptidase	Machinery gene
HUZ79_RS21570 (HUZ79_21525)	hrpB	4391106..4393535 (-)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
HUZ79_RS21575 (HUZ79_21530)	thpR	4393608..4394144 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
HUZ79_RS21580 (HUZ79_21535)	sfsA	4394144..4394860 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
HUZ79_RS21585 (HUZ79_21540)	dksA	4395023..4395478 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=455746 HUZ79_RS21565 WP_049116597.1 4390258..4391058(+) (pilD) [Klebsiella quasipneumoniae strain SWHEFF_72]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=455746 HUZ79_RS21565 WP_049116597.1 4390258..4391058(+) (pilD) [Klebsiella quasipneumoniae strain SWHEFF_72]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCACTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425