Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JFJ84_RS03195 Genome accession   NZ_CP066739
Coordinates   627400..628776 (+) Length   458 a.a.
NCBI ID   WP_012341229.1    Uniprot ID   A0A9Q7E7X5
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622400..633776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS03175 (JFJ84_03170) - 623519..624130 (-) 612 WP_012341227.1 TIGR04211 family SH3 domain-containing protein -
  JFJ84_RS03180 (JFJ84_03175) - 624235..625497 (-) 1263 WP_011609346.1 inorganic phosphate transporter -
  JFJ84_RS03185 (JFJ84_03180) - 625524..626204 (-) 681 WP_011609345.1 TIGR00153 family protein -
  JFJ84_RS03190 (JFJ84_03185) - 626347..627390 (+) 1044 WP_012341228.1 inorganic triphosphatase -
  JFJ84_RS03195 (JFJ84_03190) radA/sms 627400..628776 (+) 1377 WP_012341229.1 DNA repair protein RadA Machinery gene
  JFJ84_RS03200 (JFJ84_03195) lrp 628878..629354 (+) 477 WP_011609342.1 leucine-responsive transcriptional regulator Lrp -
  JFJ84_RS03205 (JFJ84_03200) - 629356..632067 (+) 2712 WP_198974109.1 FtsK/SpoIIIE family DNA translocase -
  JFJ84_RS10735 - 632155..632382 (-) 228 Protein_626 YadA C-terminal domain-containing protein -
  JFJ84_RS03215 (JFJ84_03210) - 633215..633358 (-) 144 WP_199275204.1 hypothetical protein -
  JFJ84_RS03220 (JFJ84_03215) - 633379..633639 (-) 261 WP_199275205.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49581.22 Da        Isoelectric Point: 8.3935

>NTDB_id=455741 JFJ84_RS03195 WP_012341229.1 627400..628776(+) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-069]
MAKSPKTAYVCNDCGAEFARWQGQCSACKAWNTISEVRLVSTAKVKNDRFSGYAGETKAKIQTLAEISLQETPRFTSGFR
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQSMTALYITGEESLQQVAMRANRLGLPTDRLQLLSETSIEQI
CHLADQLKPQIIVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGESDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVMVVWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEHNRLALLLAVLHRHGGLQMSDQDIFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFANKPKSAVENMQVFTVKKLADALAILDNF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=455741 JFJ84_RS03195 WP_012341229.1 627400..628776(+) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGGCAAAATCACCCAAAACAGCCTACGTGTGTAATGACTGCGGTGCGGAGTTTGCCCGTTGGCAAGGACAGTGTTCTGC
ATGTAAAGCATGGAATACGATTAGCGAAGTGCGGTTAGTTTCTACAGCAAAAGTGAAAAATGATCGTTTTAGCGGATATG
CAGGAGAAACGAAAGCCAAAATTCAAACTTTAGCTGAAATCAGTTTGCAAGAAACGCCTCGTTTTACCAGTGGTTTTAGA
GAATTAGATCGTGTATTGGGGGGCGGAATTGTGCCGGGTAGTGCGATTTTAATCGGTGGGCATCCCGGTGCAGGAAAAAG
TACCCTACTGTTACAAGTGATGTGCGGACTTGCTCAAAGTATGACCGCACTTTATATCACGGGCGAAGAAAGCCTTCAAC
AAGTTGCTATGCGAGCTAATCGTTTAGGATTGCCAACGGATCGTTTGCAACTCCTATCTGAAACTTCCATTGAACAAATT
TGTCATCTTGCTGATCAACTAAAGCCGCAAATTATCGTTATTGACTCTATTCAGGTAATGCATTTATCTGATATTCAATC
TTCCCCCGGAAGTGTAGCTCAAGTGCGTGAATGTGCGGCATTTTTGACCCGTTATGCTAAGACAAGGCAAGTTGCCATTA
TCATGGTCGGTCATGTAACGAAAGACGGAACGTTGGCAGGACCAAAGGTATTAGAACATGCAATTGATGCATCTTTATTG
TTAGAAGGCGAATCCGATTCACGCTATCGCACTTTGCGTAGTCATAAGAATCGTTTTGGTGCGGTGAATGAATTGGGTGT
TTTTGCGATGACAGAGCAAGGTTTGAGAGAGGTTAAAAATCCTTCTGCGATTTTTTTAAGTCGTGGTGATGAACAAACGT
CAGGAAGTTCCGTGATGGTAGTATGGGAAGGAACTCGTCCTTTATTAGTTGAAATTCAAGCACTTGTTGATCATTCCATG
TTAGCCAATCCAAGGCGTGTTGCAGTAGGTTTAGAACATAATCGATTAGCATTGCTTTTAGCGGTATTACATCGTCATGG
CGGTTTACAAATGTCCGATCAAGATATTTTTGTTAATGTTGTTGGCGGGGTAAAAGTAACGGAAACCAGTGCCGATCTTG
CCTTATTGCTGGCATTAATTTCCAGCTTTCGTAATCGACCTTTGCCACAAGATTTAGTCGTGTTCGGCGAGGTAGGTTTA
GCGGGGGAAATTCGCCCTGTACCAAGTGGACAGGAACGTATTAGTGAAGCAGCAAAGCACGGTTTTAAGCGAGCTATTGT
TCCCTTTGCAAATAAACCGAAAAGTGCGGTCGAAAATATGCAAGTTTTTACAGTCAAGAAATTAGCGGATGCGTTGGCGA
TATTAGATAATTTTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(78-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E7X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.495

100

0.476
  radA Streptococcus pneumoniae Rx1

46.62

93.668

0.437
  radA Streptococcus pneumoniae D39

46.62

93.668

0.437
  radA Streptococcus pneumoniae R6

46.62

93.668

0.437
  radA Streptococcus pneumoniae TIGR4

46.62

93.668

0.437
  radA Streptococcus mitis NCTC 12261

46.62

93.668

0.437
  radA Streptococcus mitis SK321

46.62

93.668

0.437