Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   JFJ84_RS01475 Genome accession   NZ_CP066739
Coordinates   282670..283347 (+) Length   225 a.a.
NCBI ID   WP_080514398.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277670..288347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS01435 (JFJ84_01430) tolR 278126..278548 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  JFJ84_RS01440 (JFJ84_01435) tolA 278567..279622 (+) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  JFJ84_RS01445 (JFJ84_01440) tolB 279650..280954 (+) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  JFJ84_RS01450 (JFJ84_01445) pal 280964..281419 (+) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  JFJ84_RS01470 (JFJ84_01465) comN 282094..282621 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFJ84_RS01475 (JFJ84_01470) comO 282670..283347 (+) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  JFJ84_RS01480 (JFJ84_01475) comP 283350..284030 (+) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  JFJ84_RS01485 (JFJ84_01480) comQ 284053..284328 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFJ84_RS01490 (JFJ84_01485) recC 284381..287815 (+) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25781.51 Da        Isoelectric Point: 8.8841

>NTDB_id=455726 JFJ84_RS01475 WP_080514398.1 282670..283347(+) (comO) [Histophilus somni strain ASc-MMNZ-VFA-069]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFAQDKSGKSIVV
AQADNEPPNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFNWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=455726 JFJ84_RS01475 WP_080514398.1 282670..283347(+) (comO) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGCACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCCCCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGATGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TAATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.718

92.889

0.471