Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ55_RS14905 Genome accession   NZ_CP055000
Coordinates   2983357..2983986 (-) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Shigella flexneri strain STIN_80     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978357..2988986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ55_RS14890 (HUZ55_14820) helD 2978599..2980653 (-) 2055 WP_033554506.1 DNA helicase IV -
  HUZ55_RS14895 (HUZ55_14825) - 2980776..2981222 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ55_RS14900 (HUZ55_14830) yccS 2981232..2983394 (+) 2163 WP_023281787.1 YccS family putative transporter -
  HUZ55_RS14905 (HUZ55_14835) sxy/tfoX 2983357..2983986 (-) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ55_RS14910 (HUZ55_14840) sulA 2984205..2984714 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ55_RS14915 (HUZ55_14845) ompA 2985071..2986111 (+) 1041 WP_000750416.1 porin OmpA -
  HUZ55_RS14920 (HUZ55_14850) matP 2986187..2986639 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ55_RS14925 (HUZ55_14855) - 2986825..2988585 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=455654 HUZ55_RS14905 WP_000839152.1 2983357..2983986(-) (sxy/tfoX) [Shigella flexneri strain STIN_80]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455654 HUZ55_RS14905 WP_000839152.1 2983357..2983986(-) (sxy/tfoX) [Shigella flexneri strain STIN_80]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995