Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ57_RS14335 Genome accession   NZ_CP054992
Coordinates   2919075..2919704 (-) Length   209 a.a.
NCBI ID   WP_039020486.1    Uniprot ID   -
Organism   Shigella flexneri strain STIN_87     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2914075..2924704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ57_RS14320 (HUZ57_14215) helD 2914317..2916371 (-) 2055 WP_001295354.1 DNA helicase IV -
  HUZ57_RS14325 (HUZ57_14220) - 2916494..2916940 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HUZ57_RS14330 (HUZ57_14225) yccS 2916950..2919112 (+) 2163 WP_000875058.1 YccS family putative transporter -
  HUZ57_RS14335 (HUZ57_14230) sxy/tfoX 2919075..2919704 (-) 630 WP_039020486.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ57_RS14340 (HUZ57_14235) sulA 2919923..2920432 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUZ57_RS14345 (HUZ57_14240) ompA 2920789..2921829 (+) 1041 WP_001400178.1 porin OmpA -
  HUZ57_RS14350 (HUZ57_14245) matP 2921905..2922357 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUZ57_RS14355 (HUZ57_14250) - 2922543..2924303 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24132.99 Da        Isoelectric Point: 9.2180

>NTDB_id=455608 HUZ57_RS14335 WP_039020486.1 2919075..2919704(-) (sxy/tfoX) [Shigella flexneri strain STIN_87]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRVSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455608 HUZ57_RS14335 WP_039020486.1 2919075..2919704(-) (sxy/tfoX) [Shigella flexneri strain STIN_87]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTGTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995