Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   JFL57_RS08645 Genome accession   NZ_CP066565
Coordinates   1903015..1903692 (-) Length   225 a.a.
NCBI ID   WP_081376624.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-076     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1898015..1908692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL57_RS08630 (JFL57_08630) recC 1898547..1901981 (-) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  JFL57_RS08635 (JFL57_08635) comQ 1902034..1902288 (-) 255 WP_415874044.1 DUF5374 domain-containing protein Machinery gene
  JFL57_RS08640 (JFL57_08640) comP 1902332..1903012 (-) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  JFL57_RS08645 (JFL57_08645) comO 1903015..1903692 (-) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  JFL57_RS08650 (JFL57_08650) comN 1903741..1904268 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL57_RS08670 (JFL57_08670) pal 1904942..1905397 (-) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  JFL57_RS08675 (JFL57_08675) tolB 1905407..1906711 (-) 1305 WP_198986910.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL57_RS08680 (JFL57_08680) tolA 1906739..1907794 (-) 1056 WP_075293670.1 cell envelope integrity protein TolA -
  JFL57_RS08685 (JFL57_08685) tolR 1907813..1908235 (-) 423 WP_011608414.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25852.55 Da        Isoelectric Point: 8.6710

>NTDB_id=455597 JFL57_RS08645 WP_081376624.1 1903015..1903692(-) (comO) [Histophilus somni strain ASc-MMNZ-VFA-076]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFEQDKSGKSIVV
AQADNEPSNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFHWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=455597 JFL57_RS08645 WP_081376624.1 1903015..1903692(-) (comO) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGAACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCTTCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGGTGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TCATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.239

92.889

0.467