Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CT43_RS20195 Genome accession   NC_017208
Coordinates   4014644..4015102 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar chinensis CT-43     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4009644..4020102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT43_RS20180 (CT43_CH3999) - 4010314..4010550 (+) 237 WP_000283738.1 hypothetical protein -
  CT43_RS20185 (CT43_CH4000) - 4010711..4012819 (-) 2109 WP_000421679.1 polyphosphate kinase -
  CT43_RS20190 (CT43_CH4001) - 4012928..4014502 (-) 1575 WP_003271474.1 Ppx/GppA family phosphatase -
  CT43_RS20195 (CT43_CH4002) kre 4014644..4015102 (+) 459 WP_000804864.1 YkyB family protein Regulator
  CT43_RS20200 (CT43_CH4003) - 4015134..4015796 (-) 663 WP_000922469.1 YkyA family protein -
  CT43_RS20205 (CT43_CH4004) - 4016410..4017063 (-) 654 WP_000680816.1 diguanylate cyclase domain-containing protein -
  CT43_RS20210 - 4017227..4017460 (+) 234 WP_000939446.1 SPP1 phage holin family protein -
  CT43_RS20215 (CT43_CH4005) - 4017492..4017992 (-) 501 WP_000708123.1 hypothetical protein -
  CT43_RS20220 (CT43_CH4006) - 4018403..4019944 (+) 1542 WP_000449905.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=45559 CT43_RS20195 WP_000804864.1 4014644..4015102(+) (kre) [Bacillus thuringiensis serovar chinensis CT-43]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=45559 CT43_RS20195 WP_000804864.1 4014644..4015102(+) (kre) [Bacillus thuringiensis serovar chinensis CT-43]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment