Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JFL57_RS06955 Genome accession   NZ_CP066565
Coordinates   1557564..1558940 (-) Length   458 a.a.
NCBI ID   WP_012341229.1    Uniprot ID   A0A9Q7E7X5
Organism   Histophilus somni strain ASc-MMNZ-VFA-076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552564..1563940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL57_RS06945 (JFL57_06945) - 1554276..1556984 (-) 2709 WP_075294135.1 FtsK/SpoIIIE family DNA translocase -
  JFL57_RS06950 (JFL57_06950) lrp 1556986..1557462 (-) 477 WP_011609342.1 leucine-responsive transcriptional regulator Lrp -
  JFL57_RS06955 (JFL57_06955) radA/sms 1557564..1558940 (-) 1377 WP_012341229.1 DNA repair protein RadA Machinery gene
  JFL57_RS06960 (JFL57_06960) - 1558950..1559993 (-) 1044 WP_075294136.1 inorganic triphosphatase -
  JFL57_RS06965 (JFL57_06965) - 1560136..1560816 (+) 681 WP_011609345.1 TIGR00153 family protein -
  JFL57_RS06970 (JFL57_06970) - 1560843..1562105 (+) 1263 WP_011609346.1 inorganic phosphate transporter -
  JFL57_RS06975 (JFL57_06975) - 1562210..1562821 (+) 612 WP_012341227.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49581.22 Da        Isoelectric Point: 8.3935

>NTDB_id=455582 JFL57_RS06955 WP_012341229.1 1557564..1558940(-) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-076]
MAKSPKTAYVCNDCGAEFARWQGQCSACKAWNTISEVRLVSTAKVKNDRFSGYAGETKAKIQTLAEISLQETPRFTSGFR
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQSMTALYITGEESLQQVAMRANRLGLPTDRLQLLSETSIEQI
CHLADQLKPQIIVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGESDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVMVVWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEHNRLALLLAVLHRHGGLQMSDQDIFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFANKPKSAVENMQVFTVKKLADALAILDNF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=455582 JFL57_RS06955 WP_012341229.1 1557564..1558940(-) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGGCAAAATCACCCAAAACAGCCTACGTGTGTAATGACTGCGGTGCGGAGTTTGCCCGTTGGCAAGGACAGTGTTCTGC
ATGTAAAGCATGGAATACGATTAGCGAAGTGCGGTTAGTTTCTACAGCAAAAGTGAAAAATGATCGTTTTAGCGGATATG
CAGGAGAAACGAAAGCCAAAATTCAAACTTTAGCTGAAATCAGTTTGCAAGAAACGCCTCGTTTTACCAGTGGTTTTAGA
GAATTAGATCGTGTATTGGGGGGCGGAATTGTGCCGGGTAGTGCGATTTTAATCGGTGGGCATCCCGGTGCAGGAAAAAG
TACCCTACTGTTACAAGTGATGTGTGGACTTGCTCAAAGTATGACCGCACTTTATATCACGGGCGAAGAAAGCCTTCAAC
AAGTTGCTATGCGAGCTAATCGTTTAGGATTGCCAACGGATCGTTTGCAACTCCTATCTGAAACCTCAATTGAACAAATT
TGTCATCTTGCTGATCAACTAAAGCCGCAAATTATCGTTATTGACTCTATTCAGGTAATGCATTTATCTGATATTCAATC
TTCCCCCGGAAGTGTAGCTCAAGTGCGTGAATGTGCGGCATTTTTGACCCGTTATGCTAAGACAAGGCAAGTTGCCATTA
TCATGGTCGGTCATGTAACGAAAGATGGAACGTTGGCAGGACCAAAGGTATTAGAACATGCAATTGATGCATCTTTATTG
TTAGAAGGCGAATCCGATTCACGCTATCGCACTTTGCGTAGTCATAAGAATCGTTTTGGTGCTGTGAATGAATTGGGTGT
TTTTGCGATGACAGAGCAAGGTTTGAGGGAGGTTAAAAATCCTTCTGCGATTTTTTTAAGTCGTGGTGATGAACAAACGT
CAGGAAGTTCCGTGATGGTAGTATGGGAAGGAACTCGTCCTTTATTAGTTGAAATTCAAGCACTTGTTGATCATTCCATG
TTAGCCAATCCAAGACGTGTTGCAGTAGGTTTAGAGCATAATCGATTAGCATTGCTTTTAGCGGTATTACATCGTCATGG
CGGTTTACAAATGTCCGATCAAGATATTTTTGTTAATGTTGTTGGCGGGGTAAAAGTAACGGAAACCAGTGCCGATCTTG
CCTTATTGCTGGCATTAATTTCCAGCTTTCGTAATCGACCTTTGCCACAAGATTTAGTCGTGTTCGGCGAGGTAGGTTTA
GCGGGGGAAATTCGCCCTGTACCAAGTGGACAGGAACGTATTAGTGAAGCAGCAAAGCACGGTTTTAAGCGAGCTATTGT
TCCCTTTGCAAATAAACCGAAAAGTGCGGTCGAAAATATGCAAGTTTTTACAGTCAAGAAATTAGCGGATGCGTTGGCGA
TATTAGATAATTTTTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(78-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E7X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.495

100

0.476
  radA Streptococcus pneumoniae Rx1

46.62

93.668

0.437
  radA Streptococcus pneumoniae D39

46.62

93.668

0.437
  radA Streptococcus pneumoniae R6

46.62

93.668

0.437
  radA Streptococcus pneumoniae TIGR4

46.62

93.668

0.437
  radA Streptococcus mitis NCTC 12261

46.62

93.668

0.437
  radA Streptococcus mitis SK321

46.62

93.668

0.437