Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JFL55_RS10280 Genome accession   NZ_CP066564
Coordinates   2174986..2175636 (+) Length   216 a.a.
NCBI ID   WP_012340956.1    Uniprot ID   A0A9Q6YZQ0
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2169986..2180636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS10280 (JFL55_10280) sxy/tfoX 2174986..2175636 (+) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator
  JFL55_RS10285 (JFL55_10285) - 2176071..2176163 (-) 93 WP_041604420.1 methionine/alanine import family NSS transporter small subunit -
  JFL55_RS10290 (JFL55_10290) - 2176166..2177674 (-) 1509 WP_011609857.1 sodium-dependent transporter -
  JFL55_RS10295 (JFL55_10295) lysA 2177938..2179191 (-) 1254 WP_012340955.1 diaminopimelate decarboxylase -
  JFL55_RS10300 (JFL55_10300) lptM 2179213..2179344 (-) 132 WP_012340954.1 LPS translocon maturation chaperone LptM -
  JFL55_RS10305 (JFL55_10305) cyaY 2179469..2179777 (+) 309 WP_012340953.1 iron donor protein CyaY -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24719.36 Da        Isoelectric Point: 10.5049

>NTDB_id=455550 JFL55_RS10280 WP_012340956.1 2174986..2175636(+) (sxy/tfoX) [Histophilus somni strain ASc-MMNZ-VFA-69]
MTKSLKDTENIRSELTELIGTITVKNLFSGYGLFKKGLMFGLYQQGKFYIRAEKELAKYLESLGALSYLALTPNPQLNIG
NYYLLPKEITQNKEHFRQILYLSIAQTRAKKIAQELARKKRIKDLPNLSIKHERLLSKIHIKDIKSFKLKGAANCYIELK
LSGIPVNLILFWNLTAALLYKNVNVLTKTEKEQALKKLNKGLERAGLKPVEIILLQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=455550 JFL55_RS10280 WP_012340956.1 2174986..2175636(+) (sxy/tfoX) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGACCAAATCATTAAAAGACACTGAAAATATTAGAAGTGAACTTACCGAATTGATAGGAACTATAACTGTGAAAAATCT
TTTTTCTGGTTATGGTTTATTTAAGAAAGGTCTTATGTTTGGTTTATACCAGCAAGGAAAATTTTATATTCGAGCAGAGA
AGGAATTAGCTAAATACCTAGAAAGCCTAGGTGCTTTATCATATTTAGCTTTAACCCCAAACCCTCAACTAAATATAGGA
AATTATTATCTATTGCCAAAAGAAATTACACAGAATAAGGAACATTTTCGTCAAATTCTCTATCTATCTATTGCTCAAAC
TAGAGCAAAGAAAATTGCACAAGAACTTGCTCGGAAAAAAAGAATAAAAGATCTCCCAAATCTTTCGATAAAACACGAAA
GGCTTCTTTCTAAAATACACATTAAAGATATAAAATCCTTTAAATTAAAAGGAGCAGCAAATTGCTACATAGAGTTAAAA
CTCTCAGGTATTCCTGTAAATCTCATTTTATTTTGGAATCTTACTGCCGCACTTTTATACAAGAATGTCAATGTATTGAC
TAAAACAGAAAAAGAACAGGCTTTAAAGAAACTTAATAAAGGTCTAGAGAGAGCAGGATTAAAACCTGTTGAGATTATAC
TTTTACAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(17-106)

TfoX C-terminal domain (TfoX_C)

(119-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YZQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

39.801

93.056

0.37