Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CT43_RS10090 Genome accession   NC_017208
Coordinates   1978923..1979210 (+) Length   95 a.a.
NCBI ID   WP_000648335.1    Uniprot ID   A0AAN4HL03
Organism   Bacillus thuringiensis serovar chinensis CT-43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1973923..1984210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT43_RS10070 (CT43_CH1949) - 1975095..1975292 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  CT43_RS10075 (CT43_CH1950) - 1975324..1975785 (+) 462 WP_000035001.1 NUDIX hydrolase -
  CT43_RS10080 (CT43_CH1951) nadE 1975834..1976652 (-) 819 WP_000174893.1 ammonia-dependent NAD(+) synthetase -
  CT43_RS10085 (CT43_CH1952) - 1976926..1978806 (+) 1881 WP_001025996.1 FtsX-like permease family protein -
  CT43_RS10090 (CT43_CH1953) abrB 1978923..1979210 (+) 288 WP_000648335.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CT43_RS10095 (CT43_CH1954) - 1979486..1980433 (+) 948 WP_000099765.1 serine protease -
  CT43_RS10100 (CT43_CH1955) - 1980473..1980781 (-) 309 WP_001259912.1 helix-turn-helix transcriptional regulator -
  CT43_RS10105 (CT43_CH1956) - 1980888..1981823 (+) 936 WP_000877945.1 aldo/keto reductase -
  CT43_RS10110 (CT43_CH1957) - 1981871..1983046 (+) 1176 WP_001082498.1 MFS transporter -
  CT43_RS10115 (CT43_CH1958) - 1983341..1983565 (-) 225 WP_000162602.1 hypothetical protein -
  CT43_RS10120 (CT43_CH1959) - 1983650..1983997 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10603.31 Da        Isoelectric Point: 4.8408

>NTDB_id=45552 CT43_RS10090 WP_000648335.1 1978923..1979210(+) (abrB) [Bacillus thuringiensis serovar chinensis CT-43]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVESDKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=45552 CT43_RS10090 WP_000648335.1 1978923..1979210(+) (abrB) [Bacillus thuringiensis serovar chinensis CT-43]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAATCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment