Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CT43_RS09465 Genome accession   NC_017208
Coordinates   1862332..1862613 (+) Length   93 a.a.
NCBI ID   WP_000843025.1    Uniprot ID   A0AAN4KMT0
Organism   Bacillus thuringiensis serovar chinensis CT-43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1857332..1867613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT43_RS09430 (CT43_CH1819) - 1857562..1858059 (+) 498 WP_000404006.1 hypothetical protein -
  CT43_RS34410 (CT43_CH1820) - 1858111..1858278 (+) 168 WP_000539655.1 hypothetical protein -
  CT43_RS09435 (CT43_CH1821) - 1859406..1859816 (+) 411 WP_000053745.1 hypothetical protein -
  CT43_RS09440 (CT43_CH1822) - 1859813..1860466 (+) 654 WP_001043868.1 hypothetical protein -
  CT43_RS09445 (CT43_CH1823) - 1860588..1860905 (+) 318 WP_000805617.1 hypothetical protein -
  CT43_RS09450 (CT43_CH1824) - 1860922..1861839 (+) 918 WP_000154978.1 hypothetical protein -
  CT43_RS09455 (CT43_CH1825) - 1861842..1861988 (+) 147 WP_000790088.1 BC1881 family protein -
  CT43_RS09460 (CT43_CH1826) - 1862114..1862335 (+) 222 WP_001202995.1 hypothetical protein -
  CT43_RS09465 (CT43_CH1827) abrB 1862332..1862613 (+) 282 WP_000843025.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CT43_RS09470 (CT43_CH1828) - 1862615..1862812 (+) 198 WP_001294615.1 hypothetical protein -
  CT43_RS09475 - 1862839..1863006 (+) 168 WP_080546110.1 hypothetical protein -
  CT43_RS09480 (CT43_CH1829) - 1863009..1863533 (+) 525 WP_000410292.1 hypothetical protein -
  CT43_RS09485 (CT43_CH1830) - 1863530..1863712 (+) 183 WP_001106358.1 DUF6877 family protein -
  CT43_RS09490 (CT43_CH1831) - 1863702..1864028 (+) 327 WP_000200015.1 hypothetical protein -
  CT43_RS09495 - 1864289..1864669 (+) 381 WP_000196741.1 hypothetical protein -
  CT43_RS09500 (CT43_CH1832) - 1865076..1865639 (+) 564 WP_000873650.1 recombinase family protein -
  CT43_RS09505 (CT43_CH1833) - 1865837..1866265 (+) 429 WP_001086032.1 phBC6A51 family helix-turn-helix protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10244.87 Da        Isoelectric Point: 4.6282

>NTDB_id=45551 CT43_RS09465 WP_000843025.1 1862332..1862613(+) (abrB) [Bacillus thuringiensis serovar chinensis CT-43]
MKSTGIIRNIDPLGRIVVPMELRRTLGIQVKDPMEIFVDGESIILQKYNPNNSCQITGEVSEENIELAGGKLVLSPEGVD
QVLAELEARLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=45551 CT43_RS09465 WP_000843025.1 1862332..1862613(+) (abrB) [Bacillus thuringiensis serovar chinensis CT-43]
ATGAAATCAACAGGTATCATTCGTAACATTGATCCATTAGGACGTATTGTGGTTCCAATGGAATTACGCCGTACATTAGG
TATCCAGGTAAAGGATCCGATGGAGATTTTCGTAGATGGTGAATCTATTATTCTACAAAAATATAACCCTAATAACTCTT
GCCAAATTACAGGAGAGGTTTCAGAAGAAAATATTGAACTAGCTGGCGGTAAACTCGTGCTAAGTCCTGAAGGGGTTGAT
CAGGTATTAGCGGAACTCGAAGCACGTTTGAAGGGGCGATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

62.637

97.849

0.613

Multiple sequence alignment