Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUZ63_RS14950 Genome accession   NZ_CP054965
Coordinates   3098257..3098886 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STIN_95     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3093257..3103886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ63_RS14935 (HUZ63_14755) helD 3093499..3095553 (-) 2055 WP_001350178.1 DNA helicase IV -
  HUZ63_RS14940 (HUZ63_14760) yccF 3095676..3096122 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HUZ63_RS14945 (HUZ63_14765) yccS 3096132..3098294 (+) 2163 WP_000875008.1 YccS family putative transporter -
  HUZ63_RS14950 (HUZ63_14770) sxy/tfoX 3098257..3098886 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUZ63_RS14955 (HUZ63_14775) sulA 3099105..3099614 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HUZ63_RS14960 (HUZ63_14780) ompA 3099970..3101010 (+) 1041 WP_001518466.1 porin OmpA -
  HUZ63_RS14965 (HUZ63_14785) matP 3101086..3101538 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  HUZ63_RS14970 (HUZ63_14790) ycbZ 3101724..3103484 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=455492 HUZ63_RS14950 WP_000839153.1 3098257..3098886(-) (sxy/tfoX) [Escherichia coli strain STIN_95]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455492 HUZ63_RS14950 WP_000839153.1 3098257..3098886(-) (sxy/tfoX) [Escherichia coli strain STIN_95]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1