Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JFL54_RS02960 Genome accession   NZ_CP066563
Coordinates   572092..573468 (+) Length   458 a.a.
NCBI ID   WP_132995234.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567092..578468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL54_RS02940 (JFL54_02940) - 568211..568822 (-) 612 WP_132995230.1 TIGR04211 family SH3 domain-containing protein -
  JFL54_RS02945 (JFL54_02945) - 568927..570189 (-) 1263 WP_011609346.1 inorganic phosphate transporter -
  JFL54_RS02950 (JFL54_02950) - 570216..570896 (-) 681 WP_011609345.1 TIGR00153 family protein -
  JFL54_RS02955 (JFL54_02955) - 571039..572082 (+) 1044 WP_132995232.1 inorganic triphosphatase -
  JFL54_RS02960 (JFL54_02960) radA/sms 572092..573468 (+) 1377 WP_132995234.1 DNA repair protein RadA Machinery gene
  JFL54_RS02965 (JFL54_02965) lrp 573569..574045 (+) 477 WP_011609342.1 leucine-responsive transcriptional regulator Lrp -
  JFL54_RS02970 (JFL54_02970) - 574047..576758 (+) 2712 WP_132995236.1 FtsK/SpoIIIE family DNA translocase -
  JFL54_RS09790 - 576846..577142 (-) 297 WP_233127351.1 YadA C-terminal domain-containing protein -
  JFL54_RS02980 (JFL54_02980) - 577209..578270 (-) 1062 WP_198986714.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49551.19 Da        Isoelectric Point: 8.3935

>NTDB_id=455467 JFL54_RS02960 WP_132995234.1 572092..573468(+) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-075]
MAKSPKTAYVCNDCGAEFARWQGQCSACKAWNTISEVRLVSTAKVKNDRFSGYAGEAKAKIQTLAEISLQETPRFTSGFR
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQSMTALYITGEESLQQVAMRANRLGLPTDRLQLLSETSIEQI
CHLADQLKPQIIVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGESDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVMVVWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEHNRLALLLAVLHRHGGLQMSDQDIFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFANKPKSAVENMQVFTVKKLADALAILDNF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=455467 JFL54_RS02960 WP_132995234.1 572092..573468(+) (radA/sms) [Histophilus somni strain ASc-MMNZ-VFA-075]
ATGGCAAAATCACCCAAAACAGCCTACGTGTGTAATGACTGCGGTGCGGAGTTTGCCCGTTGGCAAGGACAGTGTTCTGC
ATGTAAAGCATGGAATACGATTAGCGAAGTGCGGTTAGTTTCTACAGCAAAAGTGAAAAATGATCGTTTTAGCGGATATG
CAGGAGAAGCGAAAGCCAAAATTCAAACTTTAGCTGAAATCAGTTTGCAAGAAACGCCTCGTTTTACCAGTGGTTTTAGA
GAATTAGATCGTGTATTGGGGGGCGGAATTGTGCCGGGTAGTGCGATTTTAATCGGTGGGCATCCCGGTGCAGGAAAAAG
TACCCTACTGTTACAAGTGATGTGCGGACTTGCTCAAAGTATGACCGCACTTTATATCACGGGCGAAGAAAGCCTTCAAC
AAGTTGCTATGCGAGCTAATCGTTTAGGATTGCCAACGGATCGTTTGCAACTCCTATCTGAAACCTCAATTGAACAAATT
TGTCATCTTGCTGATCAACTAAAGCCGCAAATTATCGTTATTGACTCTATTCAGGTAATGCATTTATCTGATATTCAATC
TTCCCCCGGAAGTGTAGCTCAAGTGCGTGAATGTGCGGCATTTTTGACCCGTTATGCTAAGACAAGGCAAGTTGCCATTA
TCATGGTTGGTCATGTAACGAAAGACGGAACGTTGGCAGGGCCAAAGGTATTAGAACATGCAATTGATGCATCTTTATTG
TTAGAAGGTGAATCCGATTCACGCTATCGCACTTTGCGTAGTCATAAGAATCGTTTTGGTGCGGTGAATGAATTGGGTGT
TTTTGCGATGACAGAGCAAGGTTTGAGAGAGGTTAAAAATCCTTCTGCGATTTTTTTAAGTCGTGGTGATGAACAAACGT
CAGGAAGTTCCGTGATGGTAGTATGGGAAGGAACTCGTCCTTTATTGGTTGAAATTCAAGCACTTGTCGATCATTCCATG
TTAGCCAATCCAAGACGTGTTGCAGTAGGTTTAGAACATAATCGATTAGCATTGCTTCTAGCGGTATTACATCGTCATGG
CGGTTTACAAATGTCCGATCAAGATATTTTTGTTAATGTTGTTGGCGGGGTAAAAGTAACGGAAACCAGTGCCGATCTTG
CCTTATTGCTGGCATTAATTTCCAGCTTTCGTAATCGACCTTTGCCACAAGATTTAGTCGTGTTCGGCGAGGTAGGTTTA
GCAGGGGAAATTCGCCCTGTACCAAGTGGACAGGAACGTATTAGTGAAGCAGCAAAGCACGGTTTTAAGCGAGCTATTGT
TCCCTTTGCAAATAAACCGAAAAGTGCGGTCGAAAATATGCAAGTTTTTACAGTCAAGAAATTAGCGGATGCATTGGCGA
TATTAGATAATTTTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.277

100

0.474
  radA Streptococcus pneumoniae Rx1

46.62

93.668

0.437
  radA Streptococcus pneumoniae D39

46.62

93.668

0.437
  radA Streptococcus pneumoniae R6

46.62

93.668

0.437
  radA Streptococcus pneumoniae TIGR4

46.62

93.668

0.437
  radA Streptococcus mitis NCTC 12261

46.62

93.668

0.437
  radA Streptococcus mitis SK321

46.62

93.668

0.437