Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JFL53_RS06600 Genome accession   NZ_CP066562
Coordinates   1337685..1340516 (-) Length   943 a.a.
NCBI ID   WP_132995415.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1332685..1345516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL53_RS06580 (JFL53_06580) - 1334133..1334807 (+) 675 WP_075321348.1 SPOR domain-containing protein -
  JFL53_RS06585 (JFL53_06585) mreD 1334833..1335321 (-) 489 WP_011609280.1 rod shape-determining protein MreD -
  JFL53_RS06590 (JFL53_06590) mreC 1335321..1336376 (-) 1056 WP_132995417.1 rod shape-determining protein MreC -
  JFL53_RS06595 (JFL53_06595) - 1336458..1337513 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFL53_RS06600 (JFL53_06600) uvrA 1337685..1340516 (-) 2832 WP_132995415.1 excinuclease ABC subunit UvrA Machinery gene
  JFL53_RS06605 (JFL53_06605) ssb 1340695..1341159 (+) 465 WP_132995413.1 single-stranded DNA-binding protein Machinery gene
  JFL53_RS06610 (JFL53_06610) metF 1341245..1342129 (-) 885 WP_133098730.1 methylenetetrahydrofolate reductase -
  JFL53_RS06615 (JFL53_06615) - 1342340..1342858 (-) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  JFL53_RS06620 (JFL53_06620) nagZ 1342887..1343933 (-) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  JFL53_RS06625 (JFL53_06625) - 1343940..1344296 (-) 357 WP_012340235.1 YcfL family protein -
  JFL53_RS06630 (JFL53_06630) hinT 1344296..1344646 (-) 351 WP_012340234.1 purine nucleoside phosphoramidase -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104307.21 Da        Isoelectric Point: 6.7794

>NTDB_id=455429 JFL53_RS06600 WP_132995415.1 1337685..1340516(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-074]
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKMMLLAPVVKNRKG
EHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENS
QVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQM
LMSLAKHYDFDIELPFEKLPKKIQQIILNGSGNEEIEFQYMNDRGDVVLRHHSFEGILNNMARRYKETESMSVREELSKN
ISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDI
GPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFF
DAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRD
KGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=455429 JFL53_RS06600 WP_132995415.1 1337685..1340516(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-074]
ATGGAAAAAATTGATATTCGTGGGGCAAGAACTCACAATCTAAAAAATATAAGTTTAACAATTCCTCGTAACAAACTTGT
TGTAATTACGGGGCTGTCTGGTTCAGGAAAGTCTTCTTTGGCTTTTGATACGTTATATGCAGAGGGGCAACGCCGTTATG
TAGAGTCATTGTCTGCCTACGCTCGCCAATTTTTATCTTTAATGGAAAAACCCGATGTTGATCATATTGAAGGATTATCT
CCGGCTATTTCTATTGAACAAAAATCCACTTCTCATAATCCTCGCTCAACAGTGGGAACGATTACTGAAATTCATGATTA
TTTGCGTTTATTGTTTGCTCGAGTAGGTGAGCCGAGATGCCCAGAACATCATGTTACATTAAGCGTGCAAACTATTAGCC
AAATGGTTGATAAAGTGCTGAGTTTGCCGGAAGAAAGTAAGATGATGTTACTTGCACCGGTGGTCAAAAATCGTAAAGGC
GAGCATATCAAAATTTTAGAAAATATTGCCGCACAAGGCTATATTCGGGCAAGGATTGATGGTGAAATTTGTGATTTATC
GGATCCGCCTAAATTAGAATTACAGAAAAAACATACAATTGAAGTGGTGGTTGATCGCTTTAAAGTGCGGTCTGATTTGG
CTACTCGTTTGGCTGAATCTTTTGAAACAGCGTTAGAGTTGTCCGGTGGGACAGCAATCGTTGCGGATATGGAGAATTCG
CAAGTGGAAGAATTGATTTTTTCCGCTAATTTTGCTTGCCCTCATTGTGGTTATTCTATCCCTGAATTAGAGCCGAGGTT
GTTTTCTTTTAATAATCCTGCCGGTGCTTGTTCTACTTGTGACGGTTTAGGCGTGCAACAATATTTTGATGAAAAACGTG
TTGTACAAAACGCATCGATTTCTTTAGCCGGCGGTGCGATAAAAGGGTGGGATCGGCGTAATTTTTATTATTACCAAATG
TTGATGTCTTTAGCTAAGCACTATGATTTTGATATTGAACTACCTTTTGAAAAGTTACCGAAAAAAATTCAGCAAATTAT
CTTAAACGGTTCAGGTAACGAGGAAATTGAATTTCAATATATGAACGATCGTGGTGATGTTGTTCTTCGCCATCATAGTT
TTGAGGGGATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGTCTGTACGAGAGGAATTGTCCAAAAAT
ATTAGTAGTCGACCTTGTGTAGATTGTTGCGGTTCGAGATTACGTTCGGAAGCTCGCCATGTTTATATCGGTGAAGCTAA
TTTACCTGATGTATCAGAGAAAAGTATCGGAGAAGCACTCAATTTTATTGATAACCTGACATTGACGGGACAACGTGGAC
AAATTGCAGACAAAATTCTGAAAGAGATTAAAGAGCGGTTACAATTTTTAGTGAATGTGGGGCTGAGTTATTTATCTTTA
TCTCGTTCAGCGGAAACTTTATCCGGTGGAGAAGCACAGCGTATTCGTTTGGCAAGTCAAATTGGTGCAGGATTAGTTGG
AGTAATGTATGTACTTGATGAACCCTCAATCGGTTTACACCAACGAGATAATGAGCGTTTATTAAATACTTTGTTGCATT
TGCGTAATCTAGGCAACACAGTGATTGTGGTTGAACATGATGAAGATGCTATCATGGCAGCTGATCATATTATTGATATT
GGTCCCGGAGCCGGTGTGCATGGAGGAAATGTTGTTGCACAAGGTAATGCACAAGAAATTATGGCTAATCCAAATTCTTT
AACAGGTAACTTCTTGTCAGGTAAGGAAAAAATTGAAATTCCGCTGAAACGAACCGCAGTTGATAAGCAAAAAATGCTTA
GATTAAAAGGAGCAAGCGGTAATAACCTGAAACAGGTGAATTTGGATATTCCCGTTGGTTTATTTACCTGTGTAACAGGT
GTATCCGGTTCGGGAAAATCTACCTTAATCAATGATACTTTATTTCCATTGGCTCAAAATGCGTTAAATCGTGCGGAAAA
TTCCCAGTTTGCACCTTATCAATCAATTGAGGGACTTGAGTTTTTTGACAAAGTGATCGATATAGATCAAAGTCCGATAG
GTAGAACGCCTCGTTCCAATCCTGCAACCTATACAGGGTTATTTACGCCAATTCGTGAGTTATTTTCCGGCGTGCCGGAG
GCTCGAGCGAGAGGTTATAATCCGGGGAGATTCAGTTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGTCAAGGTGATGG
TGTTATCAAGGTTGAAATGCACTTTTTACCTGATGTTTATGTGCCTTGTGATCAATGTAAAGGCAAGCGTTATAATCGAG
AAACCTTGGAAATTCGTTACAAAGGCAAAACTATCCATCAAGTGCTTGATATGACAGTAGAAGAAGCACGAGTGTTTTTT
GATGCTATTCCAATGGTAGCTCGTAAATTACAAACGTTGATTGACGTTGGTTTATCTTATATTCGCTTAGGTCAATCTTC
GACAACCTTGTCCGGCGGAGAGGCACAAAGAGTTAAATTAGCAACAGAGCTTTCTAAACGAGATACAGGGAAGACGTTAT
ACATTTTAGATGAACCGACTACAGGATTACATTTTGCCGATATTAAACAACTCCTGACCGTCTTACATTGTTTACGTGAT
AAGGGAAATACCATAGTGGTAATTGAACATAATCTCGATGTAATAAAAACCGCTGACTGGATCGTTGATTTAGGACCGGA
AGGGGGAAATGGCGGAGGGCAAATTATTGCTACCGGCACGCCGGAAGAGGTTTGCCTAGTTGAAGGATCTCATACGGCGA
GATTTTTAAAAACTATGTTGGCTAAAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.946

100

0.569
  uvrA Streptococcus pneumoniae TIGR4

56.946

100

0.569
  uvrA Streptococcus pneumoniae D39

56.946

100

0.569