Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MS6192_RS05440 Genome accession   NZ_CP054940
Coordinates   1145521..1146150 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MS6192     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140521..1151150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6192_RS05420 (MS6192_01102) ycbZ 1140922..1142682 (-) 1761 WP_000156526.1 Lon protease family protein -
  MS6192_RS05425 (MS6192_01103) matP 1142868..1143320 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MS6192_RS05430 (MS6192_01104) ompA 1143396..1144436 (-) 1041 WP_000750416.1 porin OmpA -
  MS6192_RS05435 (MS6192_01105) sulA 1144793..1145302 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MS6192_RS05440 (MS6192_01106) sxy/tfoX 1145521..1146150 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MS6192_RS05445 (MS6192_01107) yccS 1146113..1148275 (-) 2163 WP_174190337.1 YccS family putative transporter -
  MS6192_RS05450 (MS6192_01108) yccF 1148285..1148731 (-) 447 WP_001261231.1 YccF domain-containing protein -
  MS6192_RS05455 (MS6192_01109) helD 1148854..1150908 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=455426 MS6192_RS05440 WP_000839153.1 1145521..1146150(+) (sxy/tfoX) [Escherichia coli strain MS6192]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=455426 MS6192_RS05440 WP_000839153.1 1145521..1146150(+) (sxy/tfoX) [Escherichia coli strain MS6192]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1