Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JFL51_RS06335 Genome accession   NZ_CP066560
Coordinates   1312486..1315317 (-) Length   943 a.a.
NCBI ID   WP_132995415.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307486..1320317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL51_RS06315 (JFL51_06315) - 1308934..1309608 (+) 675 WP_075321348.1 SPOR domain-containing protein -
  JFL51_RS06320 (JFL51_06320) mreD 1309634..1310122 (-) 489 WP_011609280.1 rod shape-determining protein MreD -
  JFL51_RS06325 (JFL51_06325) mreC 1310122..1311177 (-) 1056 WP_132995417.1 rod shape-determining protein MreC -
  JFL51_RS06330 (JFL51_06330) - 1311259..1312314 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFL51_RS06335 (JFL51_06335) uvrA 1312486..1315317 (-) 2832 WP_132995415.1 excinuclease ABC subunit UvrA Machinery gene
  JFL51_RS06340 (JFL51_06340) ssb 1315496..1315960 (+) 465 WP_132995413.1 single-stranded DNA-binding protein Machinery gene
  JFL51_RS06345 (JFL51_06345) metF 1316046..1316930 (-) 885 WP_132995411.1 methylenetetrahydrofolate reductase -
  JFL51_RS06350 (JFL51_06350) - 1317141..1317659 (-) 519 WP_012340237.1 ClbS/DfsB family four-helix bundle protein -
  JFL51_RS06355 (JFL51_06355) nagZ 1317688..1318734 (-) 1047 WP_012340236.1 beta-N-acetylhexosaminidase -
  JFL51_RS06360 (JFL51_06360) - 1318741..1319097 (-) 357 WP_012340235.1 YcfL family protein -
  JFL51_RS06365 (JFL51_06365) hinT 1319097..1319447 (-) 351 WP_012340234.1 purine nucleoside phosphoramidase -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104307.21 Da        Isoelectric Point: 6.7794

>NTDB_id=455375 JFL51_RS06335 WP_132995415.1 1312486..1315317(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-072]
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKMMLLAPVVKNRKG
EHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENS
QVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQM
LMSLAKHYDFDIELPFEKLPKKIQQIILNGSGNEEIEFQYMNDRGDVVLRHHSFEGILNNMARRYKETESMSVREELSKN
ISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDI
GPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFF
DAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRD
KGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=455375 JFL51_RS06335 WP_132995415.1 1312486..1315317(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-072]
ATGGAAAAAATTGATATTCGTGGGGCAAGAACTCACAATCTAAAAAATATAAGTTTAACAATTCCTCGTAACAAACTTGT
TGTAATTACGGGGCTGTCTGGTTCAGGAAAGTCTTCTTTGGCTTTTGATACGTTATATGCAGAGGGGCAACGCCGTTATG
TAGAGTCATTGTCTGCCTACGCTCGCCAATTTTTATCTTTAATGGAAAAACCCGATGTTGATCATATTGAAGGATTATCT
CCGGCTATTTCTATTGAACAAAAATCCACTTCTCATAATCCTCGCTCAACAGTGGGAACGATTACTGAAATTCATGATTA
TTTGCGTTTATTGTTTGCTCGAGTAGGTGAGCCGAGATGCCCAGAACATCATGTTACATTAAGCGTGCAAACTATTAGCC
AAATGGTTGATAAAGTGCTGAGTTTGCCGGAAGAAAGTAAGATGATGTTACTTGCACCGGTGGTCAAAAATCGTAAAGGC
GAGCATATCAAAATTTTAGAAAATATTGCCGCACAAGGCTATATTCGGGCAAGGATTGATGGTGAAATTTGTGATTTATC
GGATCCGCCTAAATTAGAATTACAGAAAAAACATACAATTGAAGTGGTGGTTGATCGCTTTAAAGTGCGGTCTGATTTGG
CTACTCGTTTGGCTGAATCTTTTGAAACAGCGTTAGAGTTGTCCGGTGGGACAGCAATCGTTGCGGATATGGAGAATTCG
CAAGTGGAAGAATTGATTTTTTCCGCTAATTTTGCTTGCCCTCATTGTGGTTATTCTATCCCTGAATTAGAGCCGAGGTT
GTTTTCTTTTAATAATCCTGCCGGTGCTTGTTCTACTTGTGACGGTTTAGGCGTGCAACAATATTTTGATGAAAAACGTG
TTGTACAAAACGCATCGATTTCTTTAGCCGGCGGTGCGATAAAAGGGTGGGATCGGCGTAATTTTTATTATTACCAAATG
TTGATGTCTTTAGCTAAGCACTATGATTTTGATATTGAACTACCTTTTGAAAAGTTACCGAAAAAAATTCAGCAAATTAT
CTTAAACGGTTCAGGTAACGAGGAAATTGAATTTCAATATATGAACGATCGTGGTGATGTTGTTCTTCGCCATCATAGTT
TTGAGGGGATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGTCTGTACGAGAGGAATTGTCCAAAAAT
ATTAGTAGTCGACCTTGTGTAGATTGTTGCGGTTCGAGATTACGTTCGGAAGCTCGCCATGTTTATATCGGTGAAGCTAA
TTTACCTGATGTATCAGAGAAAAGTATCGGAGAAGCACTCAATTTTATTGATAACCTGACATTGACGGGACAACGTGGAC
AAATTGCAGACAAAATTCTGAAAGAGATTAAAGAGCGGTTACAATTTTTAGTGAATGTGGGGCTGAGTTATTTATCTTTA
TCTCGTTCAGCGGAAACTTTATCCGGTGGAGAAGCACAGCGTATTCGTTTGGCAAGTCAAATTGGTGCAGGATTAGTTGG
AGTAATGTATGTACTTGATGAACCCTCAATCGGTTTACACCAACGAGATAATGAGCGTTTATTAAATACTTTGTTGCATT
TGCGTAATCTAGGCAACACAGTGATTGTGGTTGAACATGATGAAGATGCTATCATGGCAGCTGATCATATTATTGATATT
GGTCCCGGAGCCGGTGTGCATGGAGGAAATGTTGTTGCACAAGGTAATGCACAAGAAATTATGGCTAATCCAAATTCTTT
AACAGGTAACTTCTTGTCAGGTAAGGAAAAAATTGAAATTCCGCTGAAACGAACCGCAGTTGATAAGCAAAAAATGCTTA
GATTAAAAGGAGCAAGCGGTAATAACCTGAAACAGGTGAATTTGGATATTCCCGTTGGTTTATTTACCTGTGTAACAGGT
GTATCCGGTTCGGGAAAATCTACCTTAATCAATGATACTTTATTTCCATTGGCTCAAAATGCGTTAAATCGTGCGGAAAA
TTCCCAGTTTGCACCTTATCAATCAATTGAGGGACTTGAGTTTTTTGACAAAGTGATCGATATAGATCAAAGTCCGATAG
GTAGAACGCCTCGTTCCAATCCTGCAACCTATACAGGGTTATTTACGCCAATTCGTGAGTTATTTTCCGGCGTGCCGGAG
GCTCGAGCGAGAGGTTATAATCCGGGGAGATTCAGTTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGTCAAGGTGATGG
TGTTATCAAGGTTGAAATGCACTTTTTACCTGATGTTTATGTGCCTTGTGATCAATGTAAAGGCAAGCGTTATAATCGAG
AAACCTTGGAAATTCGTTACAAAGGCAAAACTATCCATCAAGTGCTTGATATGACAGTAGAAGAAGCACGAGTGTTTTTT
GATGCTATTCCAATGGTAGCTCGTAAATTACAAACGTTGATTGACGTTGGTTTATCTTATATTCGCTTAGGTCAATCTTC
GACAACCTTGTCCGGCGGAGAGGCACAAAGAGTTAAATTAGCAACAGAGCTTTCTAAACGAGATACAGGGAAGACGTTAT
ACATTTTAGATGAACCGACTACAGGATTACATTTTGCCGATATTAAACAACTCCTGACCGTCTTACATTGTTTACGTGAT
AAGGGAAATACCATAGTGGTAATTGAACATAATCTCGATGTAATAAAAACCGCTGACTGGATCGTTGATTTAGGACCGGA
AGGGGGAAATGGCGGAGGGCAAATTATTGCTACCGGCACGCCGGAAGAGGTTTGCCTAGTTGAAGGATCTCATACGGCGA
GATTTTTAAAAACTATGTTGGCTAAAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.946

100

0.569
  uvrA Streptococcus pneumoniae TIGR4

56.946

100

0.569
  uvrA Streptococcus pneumoniae D39

56.946

100

0.569