Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JFL51_RS04970 Genome accession   NZ_CP066560
Coordinates   1011152..1012582 (-) Length   476 a.a.
NCBI ID   WP_132994485.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-072     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006152..1017582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL51_RS04930 (JFL51_04930) - 1006185..1006958 (-) 774 WP_011609031.1 FNR family transcription factor -
  JFL51_RS04935 (JFL51_04935) infC 1007319..1007861 (+) 543 WP_075293873.1 translation initiation factor IF-3 -
  JFL51_RS04940 (JFL51_04940) rpmI 1007960..1008157 (+) 198 WP_011609029.1 50S ribosomal protein L35 -
  JFL51_RS04945 (JFL51_04945) rplT 1008228..1008581 (+) 354 WP_011609028.1 50S ribosomal protein L20 -
  JFL51_RS04950 (JFL51_04950) - 1008754..1009359 (-) 606 WP_012340507.1 DedA family protein -
  JFL51_RS04955 (JFL51_04955) rplY 1009579..1009866 (+) 288 WP_011609026.1 50S ribosomal protein L25 -
  JFL51_RS04960 (JFL51_04960) - 1010168..1010524 (-) 357 WP_198987085.1 hypothetical protein -
  JFL51_RS04965 (JFL51_04965) - 1010622..1011041 (-) 420 WP_094946299.1 hypothetical protein -
  JFL51_RS04970 (JFL51_04970) sbcB 1011152..1012582 (-) 1431 WP_132994485.1 exodeoxyribonuclease I Machinery gene
  JFL51_RS04975 (JFL51_04975) - 1012625..1015681 (-) 3057 WP_075293870.1 type I restriction endonuclease subunit R -
  JFL51_RS04980 (JFL51_04980) - 1015811..1016335 (-) 525 WP_075293869.1 transposase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55790.47 Da        Isoelectric Point: 5.6753

>NTDB_id=455365 JFL51_RS04970 WP_132994485.1 1011152..1012582(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-072]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKILAEFSQPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNDIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
IPDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLRKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=455365 JFL51_RS04970 WP_132994485.1 1011152..1012582(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-072]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCCGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCAGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAATTTTAGCTGAATTTAGTCAACCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAAGTAAATGATATAGAGCATGGTAATGCTCACGATGCAATGGCTGACGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAGTTATACAATCAGTTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCCCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTGGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTCGTAAGTTATATTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.061

97.059

0.544